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  • genotoul-bioinfo
  • D-GENIESD-GENIES
  • Issues

  • Open 6
  • Closed 106
  • All 112
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title
  • Permettre l'input d'un seul fasta et faire de l'auto-alignement
    #1 · created Oct 17, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Oct 26, 2017
  • Analyser le fasta avant de lancer l'alignement pour éviter les traitements trop longs ou donnant des résultats inexploitables
    #2 · created Oct 17, 2017 by Floreal Cabanettes   1.0   Jan 19, 2018   New feature
    • CLOSED
    • 1
    updated Jan 25, 2018
  • Ajouter la possibilité de sélectionner la zone à afficher à partir de 2 listes
    #3 · created Oct 18, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Oct 27, 2017
  • Bug de la stroke width des maps lors du changement d'identité minimale
    #4 · created Oct 18, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Oct 26, 2017
  • Trier les zones
    #5 · created Oct 18, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Oct 25, 2017
  • Réglette intensité des limites de chromosomes
    #6 · created Oct 18, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Oct 26, 2017
  • Ajout de l'export
    #7 · created Oct 18, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Nov 10, 2017
  • Fix window resize
    #8 · created Oct 18, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Oct 26, 2017
  • Big genomes: filter to keep acceptable in memory
    #9 · created Oct 18, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 2
    updated Nov 20, 2017
  • Add results to menu
    #10 · created Oct 18, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Oct 26, 2017
  • Set files from URL instead of upload them
    #11 · created Oct 23, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 01, 2017
  • Export : build fasta with sorted and re-ordonned (reversed or not) contigs
    #12 · created Oct 23, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 16, 2017
  • Add possibility to undo a sort
    #14 · created Oct 24, 2017 by Floreal Cabanettes   1.0   Enhancement New feature
    • CLOSED
    • 0
    updated Oct 25, 2017
  • Zoom en sélectionnant la zone à zoomer
    #15 · created Oct 25, 2017 by Floreal Cabanettes   1.2   New feature
    • CLOSED
    • 1
    updated Jul 12, 2018
  • Add a tooltip to show current contig and target on cursor position
    #16 · created Oct 26, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Oct 27, 2017
  • Implement support of compressed fasta files (*.gz)
    #17 · created Oct 30, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Oct 30, 2017
  • Add stats
    #18 · created Oct 30, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Jan 15, 2018
  • Concurrent jobs failed
    #97 · created Jan 04, 2018 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 1
    updated Jan 12, 2018
  • Must fasta files be stored in gzipped format to keep space?
    #19 · created Oct 30, 2017 by Floreal Cabanettes   1.0   Discussion
    • CLOSED
    • 2
    updated Feb 07, 2018
  • Ménage
    #20 · created Oct 31, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 3
    updated Nov 20, 2017
  • Add example run
    #21 · created Oct 31, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Feb 20, 2018
  • Show size of fasta files before upload
    #22 · created Nov 01, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Jan 04, 2018
  • Ajax uploading
    #23 · created Nov 01, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 01, 2017
  • Status : add a bar that progress when job progress
    #24 · created Nov 01, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 28, 2017
  • Status : auto-refresh page periodically
    #25 · created Nov 01, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 28, 2017
  • Add max size for files and check it
    #26 · created Nov 01, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 2
    updated Dec 18, 2017
  • Fix bug on small screens for run page
    #27 · created Nov 01, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 03, 2017
  • Gérer les erreurs d'upload
    #28 · created Nov 01, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 03, 2017
  • Send mail on job success/fail
    #29 · created Nov 01, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Nov 07, 2017
  • Applications.properties & Wsgi file: change url to be valid in distributed package
    #30 · created Nov 01, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 02, 2017
  • Identité : faire en absolu
    #31 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 02, 2017
  • Test Homme VS Singe => passe en mémoire ?
    #32 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Test
    • CLOSED
    • 5
    updated Nov 09, 2017
  • Distribution du programme
    #33 · created Nov 02, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Feb 22, 2018
  • Stockage des données sous forme compressée
    #34 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Enhancement Won't fix
    • CLOSED
    • 2
    updated Feb 07, 2018
  • Export : ajout de l'export d'un tableau contenant les correspondances query-target sur la diagonale
    #35 · created Nov 02, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Nov 20, 2017
  • Export : exporter les contigs assemblés selon la référence
    #36 · created Nov 02, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 2
    updated Feb 06, 2018
  • Check of uploaded extension not done (or does not cause any error)
    #37 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 03, 2017
  • Add global exception handler to catch all exception and pass job on error every time
    #38 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Bug Enhancement
    • CLOSED
    • 0
    updated Nov 08, 2017
  • Do the index after the map, if this one has not failed
    #39 · created Nov 02, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 03, 2017
  • Formulaire de contact
    #40 · created Nov 02, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 1
    updated Feb 19, 2018
  • If we have too small blocks on contigs or target, too much memory used because of too much break lines
    #41 · created Nov 03, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 4
    updated Nov 03, 2017
  • Check extensions of files before upload (for local files)
    #42 · created Nov 03, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 06, 2017
  • Handle memory exception from minimap
    #43 · created Nov 03, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 1
    updated Nov 17, 2017
  • Vérifier que les fichiers fasta fournis sont valides
    #44 · created Nov 06, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 1
    updated Dec 05, 2017
  • Test on very small sequences
    #47 · created Nov 07, 2017 by Christophe Klopp   1.0   Support
    • CLOSED
    • 2
    updated Nov 08, 2017
  • Replace spaces and special chars in job names
    #70 · created Nov 08, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 08, 2017
  • Split of contigs: when to do that?
    #71 · created Nov 09, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 2
    updated Dec 05, 2017
  • If more than 75% of contigs have length < 1% of the full fasta, do the sort automatically
    #72 · created Nov 09, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Jan 29, 2018
  • Timeout if sort is too long
    #73 · created Nov 09, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 3
    updated Nov 14, 2017
  • Menu Download / Install on genotoul hosted version
    #74 · created Nov 10, 2017 by Floreal Cabanettes   1.0   Feb 23, 2018   Done New feature
    • CLOSED
    • 2
    updated Feb 23, 2018
  • Export pictures with current zoom applied
    #75 · created Nov 10, 2017 by Floreal Cabanettes   1.1   Enhancement
    • CLOSED
    • 1
    updated Apr 11, 2018
  • Change restore zoom color
    #76 · created Nov 10, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 17, 2017
  • Revoir le système de notifications
    #77 · created Nov 10, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 13, 2017
  • input file names in the mail
    #78 · created Nov 15, 2017 by Christophe Klopp   1.0   Enhancement
    • CLOSED
    • 4
    updated Nov 17, 2017
  • Mettre le target avant le query dans le formulaire
    #79 · created Nov 15, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 17, 2017
  • Déterminer les paramètres influençant la consommation mémoire / processeur et être capable de les prédire
    #80 · created Nov 16, 2017 by Floreal Cabanettes   1.3   Test
    • 1
    updated Jul 14, 2018
  • Disable sort on all-vs-all mode
    #81 · created Nov 16, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 17, 2017
  • API Rest pour attaquer l'appli via une autre application
    #82 · created Nov 17, 2017 by Floreal Cabanettes   1.3   New feature
    • 1
    updated Jul 14, 2018
  • Scheduler local pour les soumissions de jobs locaux
    #83 · created Nov 20, 2017 by Floreal Cabanettes   1.0   Enhancement New feature
    • CLOSED
    • 0
    updated Nov 21, 2017
  • Cron pour vérifier les jobs locaux
    #84 · created Nov 20, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 21, 2017
  • Export association table : add info of reverse
    #85 · created Nov 20, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Nov 20, 2017
  • Reverse contigs: do a reverse complement, not just reverse the sequence
    #86 · created Nov 20, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Nov 21, 2017
  • Create a galery on the website to present results with...
    #87 · created Dec 01, 2017 by Christophe Klopp   1.0   Enhancement New feature
    • CLOSED
    • 0
    updated Jan 30, 2018
  • Si on met le même id plus de 2 fois dans la soumission d'un job, ça plante (on passe pas à _3)
    #88 · created Dec 04, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 0
    updated Dec 05, 2017
  • Add cluster submission support
    #89 · created Dec 12, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Dec 13, 2017
  • Add support to local+cluster batch system type
    #90 · created Dec 13, 2017 by Floreal Cabanettes   1.0   New feature
    • CLOSED
    • 0
    updated Dec 15, 2017
  • Change ORM
    #91 · created Dec 13, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Dec 13, 2017
  • Add possibility to associate a link to query / target items
    #92 · created Dec 21, 2017 by Floreal Cabanettes   1.3   New feature
    • 0
    updated Jul 14, 2018
  • Script capable de soumettre un grand nombre de jobs
    #93 · created Dec 21, 2017 by Floreal Cabanettes   1.3   New feature
    • 0
    updated Jul 14, 2018
  • Add check on file upload size server side
    #94 · created Dec 21, 2017 by Floreal Cabanettes   1.0   Bug Enhancement
    • CLOSED
    • 0
    updated Jan 04, 2018
  • Catch malformed errors server side and client side
    #95 · created Dec 22, 2017 by Floreal Cabanettes   1.0   Bug
    • CLOSED
    • 1
    updated Jan 04, 2018
  • Prepare big jobs on cluster
    #96 · created Dec 22, 2017 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 1
    updated Jan 05, 2018
  • Proposer plusieurs palettes de couleur
    #98 · created Jan 04, 2018 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Jan 29, 2018
  • List of query-target associations table: add coordinates
    #99 · created Jan 08, 2018 by Floreal Cabanettes   1.0   Enhancement
    • CLOSED
    • 0
    updated Feb 06, 2018
  • Permettre le téléchargement d'une page web permettant de visualiser en interactif en local
    #100 · created Jan 09, 2018 by Floreal Cabanettes   1.2   New feature
    • CLOSED
    • 0
    updated Jul 13, 2018
  • match coverage bar of the reference genome
    #102 · created Jan 10, 2018 by Christophe Klopp   1.2   Enhancement Won't fix
    • CLOSED
    • 0
    updated Jul 12, 2018
  • Remove BDD
    #103 · created Jan 16, 2018 by Floreal Cabanettes   1.0   Jan 19, 2018   Bug Enhancement   2d
    • CLOSED
    • 2
    updated Jan 23, 2018
  • Sort: still store sorted version on unsort
    #104 · created Jan 17, 2018 by Floreal Cabanettes   1.0   Jan 19, 2018   Enhancement
    • CLOSED
    • 0
    updated Jan 29, 2018
  • Improve databases
    #105 · created Jan 17, 2018 by Floreal Cabanettes   1.0   Jan 18, 2018   Enhancement
    • CLOSED
    • 0
    updated Jan 18, 2018
  • Fix big data in all-vs-all mode
    #106 · created Jan 17, 2018 by Floreal Cabanettes   1.0   Feb 2, 2018   Bug
    • CLOSED
    • 2
    updated Feb 05, 2018
  • Clean session status links and job status links on clear sessions/jobs and periodically
    #107 · created Jan 19, 2018 by Floreal Cabanettes   1.0   Jan 22, 2018   Bug Won't fix
    • CLOSED
    • 1
    updated Jan 23, 2018
  • Error: MySQL server has gone away
    #108 · created Jan 23, 2018 by Floreal Cabanettes   1.0   Jan 26, 2018   Bug
    • CLOSED
    • 4
    updated Jan 29, 2018
  • Run a job: if we choose a file, and then we switch to URL, the size of the file don't disappear
    #109 · created Jan 25, 2018 by Floreal Cabanettes   1.0   Jan 25, 2018   Bug
    • CLOSED
    • 0
    updated Jan 29, 2018
  • Download of query: remove contigs not present in the index
    #110 · created Jan 25, 2018 by Floreal Cabanettes   1.0   Feb 2, 2018   Bug
    • CLOSED
    • 1
    updated Jan 29, 2018
  • Summary: fail for big data: timeout
    #111 · created Jan 31, 2018 by Floreal Cabanettes   1.0   Feb 2, 2018   Bug
    • CLOSED
    • 0
    updated Jan 31, 2018
  • Add a table beside the gallery items with times and memory usage for all items
    #112 · created Jan 31, 2018 by Floreal Cabanettes   1.0   Feb 2, 2018   Enhancement
    • CLOSED
    • 0
    updated Feb 05, 2018
  • Summary stats failed on big data
    #113 · created Jan 31, 2018 by Floreal Cabanettes   1.0   Feb 9, 2018   Bug
    • CLOSED
    • 0
    updated Feb 02, 2018
  • Standalone version
    #114 · created Feb 08, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   New feature
    • CLOSED
    • 0
    updated Feb 08, 2018
  • Windows compatibility
    #115 · created Feb 08, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   Done Enhancement
    • CLOSED
    • 1
    updated Feb 22, 2018
  • Remove "you will receive a mail...." on standalone version
    #116 · created Feb 14, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   Bug
    • CLOSED
    • 0
    updated Feb 15, 2018
  • Standalone version: problem with treatments which requires mail
    #117 · created Feb 14, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   Bug
    • CLOSED
    • 0
    updated Feb 16, 2018
  • Sometimes (on windows at least) flask is really long to start. Check flask is already started before launch the browser
    #118 · created Feb 14, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   Bug
    • CLOSED
    • 0
    updated Feb 15, 2018
  • In standalone mode, load all jobs on startup to add them in the result menu
    #119 · created Feb 16, 2018 by Floreal Cabanettes   1.0   Feb 20, 2018   New feature
    • CLOSED
    • 0
    updated Feb 16, 2018
  • Add a button to delete a job
    #120 · created Feb 16, 2018 by Floreal Cabanettes   1.0   Feb 20, 2018   New feature
    • CLOSED
    • 0
    updated Feb 16, 2018
  • Check XSS and other security breaches
    #121 · created Feb 16, 2018 by Floreal Cabanettes   1.0   Feb 23, 2018   Bug
    • CLOSED
    • 0
    updated Feb 19, 2018
  • Query as reference: do we need to remove noise before
    #122 · created Feb 20, 2018 by Floreal Cabanettes   Discussion Won't fix
    • 1
    updated Feb 21, 2018
  • Ease integration of a new tool
    #123 · created Mar 02, 2018 by Floreal Cabanettes   1.1   Apr 6, 2018   Enhancement
    • CLOSED
    • 2
    • 0
    updated Apr 03, 2018
  • Add mashmap tool
    #124 · created Mar 02, 2018 by Floreal Cabanettes   1.2   Enhancement
    • CLOSED
    • 2
    • 1
    updated Jul 12, 2018
  • Add analytics logs
    #125 · created Mar 14, 2018 by Floreal Cabanettes   1.1   Mar 15, 2018   Enhancement
    • CLOSED
    • 0
    updated Apr 03, 2018
  • Add alignment file as input instead of query and target
    #126 · created Apr 03, 2018 by Floreal Cabanettes   1.1   Apr 6, 2018   New feature
    • CLOSED
    • 1
    • 1
    updated Apr 09, 2018
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