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genotoul-bioinfo
D-GENIES
Issues
Open
6
Closed
106
All
112
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Manual
Priority
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Updated date
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Label priority
Manual
Title
Permettre l'input d'un seul fasta et faire de l'auto-alignement
#1
· created
Oct 17, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Oct 26, 2017
Analyser le fasta avant de lancer l'alignement pour éviter les traitements trop longs ou donnant des résultats inexploitables
#2
· created
Oct 17, 2017
by
Floreal Cabanettes
1.0
Jan 19, 2018
New feature
CLOSED
1
updated
Jan 25, 2018
Ajouter la possibilité de sélectionner la zone à afficher à partir de 2 listes
#3
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Oct 27, 2017
Bug de la stroke width des maps lors du changement d'identité minimale
#4
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Oct 26, 2017
Trier les zones
#5
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Oct 25, 2017
Réglette intensité des limites de chromosomes
#6
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Oct 26, 2017
Ajout de l'export
#7
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Nov 10, 2017
Fix window resize
#8
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Oct 26, 2017
Big genomes: filter to keep acceptable in memory
#9
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
2
updated
Nov 20, 2017
Add results to menu
#10
· created
Oct 18, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Oct 26, 2017
Set files from URL instead of upload them
#11
· created
Oct 23, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 01, 2017
Export : build fasta with sorted and re-ordonned (reversed or not) contigs
#12
· created
Oct 23, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 16, 2017
Add possibility to undo a sort
#14
· created
Oct 24, 2017
by
Floreal Cabanettes
1.0
Enhancement
New feature
CLOSED
0
updated
Oct 25, 2017
Zoom en sélectionnant la zone à zoomer
#15
· created
Oct 25, 2017
by
Floreal Cabanettes
1.2
New feature
CLOSED
1
updated
Jul 12, 2018
Add a tooltip to show current contig and target on cursor position
#16
· created
Oct 26, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Oct 27, 2017
Implement support of compressed fasta files (*.gz)
#17
· created
Oct 30, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Oct 30, 2017
Add stats
#18
· created
Oct 30, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Jan 15, 2018
Concurrent jobs failed
#97
· created
Jan 04, 2018
by
Floreal Cabanettes
1.0
Bug
CLOSED
1
updated
Jan 12, 2018
Must fasta files be stored in gzipped format to keep space?
#19
· created
Oct 30, 2017
by
Floreal Cabanettes
1.0
Discussion
CLOSED
2
updated
Feb 07, 2018
Ménage
#20
· created
Oct 31, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
3
updated
Nov 20, 2017
Add example run
#21
· created
Oct 31, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Feb 20, 2018
Show size of fasta files before upload
#22
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Jan 04, 2018
Ajax uploading
#23
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 01, 2017
Status : add a bar that progress when job progress
#24
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 28, 2017
Status : auto-refresh page periodically
#25
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 28, 2017
Add max size for files and check it
#26
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
2
updated
Dec 18, 2017
Fix bug on small screens for run page
#27
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 03, 2017
Gérer les erreurs d'upload
#28
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 03, 2017
Send mail on job success/fail
#29
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Nov 07, 2017
Applications.properties & Wsgi file: change url to be valid in distributed package
#30
· created
Nov 01, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 02, 2017
Identité : faire en absolu
#31
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 02, 2017
Test Homme VS Singe => passe en mémoire ?
#32
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Test
CLOSED
5
updated
Nov 09, 2017
Distribution du programme
#33
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Feb 22, 2018
Stockage des données sous forme compressée
#34
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Enhancement
Won't fix
CLOSED
2
updated
Feb 07, 2018
Export : ajout de l'export d'un tableau contenant les correspondances query-target sur la diagonale
#35
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Nov 20, 2017
Export : exporter les contigs assemblés selon la référence
#36
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
2
updated
Feb 06, 2018
Check of uploaded extension not done (or does not cause any error)
#37
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 03, 2017
Add global exception handler to catch all exception and pass job on error every time
#38
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Bug
Enhancement
CLOSED
0
updated
Nov 08, 2017
Do the index after the map, if this one has not failed
#39
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 03, 2017
Formulaire de contact
#40
· created
Nov 02, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
1
updated
Feb 19, 2018
If we have too small blocks on contigs or target, too much memory used because of too much break lines
#41
· created
Nov 03, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
4
updated
Nov 03, 2017
Check extensions of files before upload (for local files)
#42
· created
Nov 03, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 06, 2017
Handle memory exception from minimap
#43
· created
Nov 03, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
1
updated
Nov 17, 2017
Vérifier que les fichiers fasta fournis sont valides
#44
· created
Nov 06, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
1
updated
Dec 05, 2017
Test on very small sequences
#47
· created
Nov 07, 2017
by
Christophe Klopp
1.0
Support
CLOSED
2
updated
Nov 08, 2017
Replace spaces and special chars in job names
#70
· created
Nov 08, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 08, 2017
Split of contigs: when to do that?
#71
· created
Nov 09, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
2
updated
Dec 05, 2017
If more than 75% of contigs have length < 1% of the full fasta, do the sort automatically
#72
· created
Nov 09, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Jan 29, 2018
Timeout if sort is too long
#73
· created
Nov 09, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
3
updated
Nov 14, 2017
Menu Download / Install on genotoul hosted version
#74
· created
Nov 10, 2017
by
Floreal Cabanettes
1.0
Feb 23, 2018
Done
New feature
CLOSED
2
updated
Feb 23, 2018
Export pictures with current zoom applied
#75
· created
Nov 10, 2017
by
Floreal Cabanettes
1.1
Enhancement
CLOSED
1
updated
Apr 11, 2018
Change restore zoom color
#76
· created
Nov 10, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 17, 2017
Revoir le système de notifications
#77
· created
Nov 10, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 13, 2017
input file names in the mail
#78
· created
Nov 15, 2017
by
Christophe Klopp
1.0
Enhancement
CLOSED
4
updated
Nov 17, 2017
Mettre le target avant le query dans le formulaire
#79
· created
Nov 15, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 17, 2017
Déterminer les paramètres influençant la consommation mémoire / processeur et être capable de les prédire
#80
· created
Nov 16, 2017
by
Floreal Cabanettes
1.3
Test
1
updated
Jul 14, 2018
Disable sort on all-vs-all mode
#81
· created
Nov 16, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 17, 2017
API Rest pour attaquer l'appli via une autre application
#82
· created
Nov 17, 2017
by
Floreal Cabanettes
1.3
New feature
1
updated
Jul 14, 2018
Scheduler local pour les soumissions de jobs locaux
#83
· created
Nov 20, 2017
by
Floreal Cabanettes
1.0
Enhancement
New feature
CLOSED
0
updated
Nov 21, 2017
Cron pour vérifier les jobs locaux
#84
· created
Nov 20, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 21, 2017
Export association table : add info of reverse
#85
· created
Nov 20, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Nov 20, 2017
Reverse contigs: do a reverse complement, not just reverse the sequence
#86
· created
Nov 20, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Nov 21, 2017
Create a galery on the website to present results with...
#87
· created
Dec 01, 2017
by
Christophe Klopp
1.0
Enhancement
New feature
CLOSED
0
updated
Jan 30, 2018
Si on met le même id plus de 2 fois dans la soumission d'un job, ça plante (on passe pas à _3)
#88
· created
Dec 04, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
0
updated
Dec 05, 2017
Add cluster submission support
#89
· created
Dec 12, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Dec 13, 2017
Add support to local+cluster batch system type
#90
· created
Dec 13, 2017
by
Floreal Cabanettes
1.0
New feature
CLOSED
0
updated
Dec 15, 2017
Change ORM
#91
· created
Dec 13, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Dec 13, 2017
Add possibility to associate a link to query / target items
#92
· created
Dec 21, 2017
by
Floreal Cabanettes
1.3
New feature
0
updated
Jul 14, 2018
Script capable de soumettre un grand nombre de jobs
#93
· created
Dec 21, 2017
by
Floreal Cabanettes
1.3
New feature
0
updated
Jul 14, 2018
Add check on file upload size server side
#94
· created
Dec 21, 2017
by
Floreal Cabanettes
1.0
Bug
Enhancement
CLOSED
0
updated
Jan 04, 2018
Catch malformed errors server side and client side
#95
· created
Dec 22, 2017
by
Floreal Cabanettes
1.0
Bug
CLOSED
1
updated
Jan 04, 2018
Prepare big jobs on cluster
#96
· created
Dec 22, 2017
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
1
updated
Jan 05, 2018
Proposer plusieurs palettes de couleur
#98
· created
Jan 04, 2018
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Jan 29, 2018
List of query-target associations table: add coordinates
#99
· created
Jan 08, 2018
by
Floreal Cabanettes
1.0
Enhancement
CLOSED
0
updated
Feb 06, 2018
Permettre le téléchargement d'une page web permettant de visualiser en interactif en local
#100
· created
Jan 09, 2018
by
Floreal Cabanettes
1.2
New feature
CLOSED
0
updated
Jul 13, 2018
match coverage bar of the reference genome
#102
· created
Jan 10, 2018
by
Christophe Klopp
1.2
Enhancement
Won't fix
CLOSED
0
updated
Jul 12, 2018
Remove BDD
#103
· created
Jan 16, 2018
by
Floreal Cabanettes
1.0
Jan 19, 2018
Bug
Enhancement
2d
CLOSED
2
updated
Jan 23, 2018
Sort: still store sorted version on unsort
#104
· created
Jan 17, 2018
by
Floreal Cabanettes
1.0
Jan 19, 2018
Enhancement
CLOSED
0
updated
Jan 29, 2018
Improve databases
#105
· created
Jan 17, 2018
by
Floreal Cabanettes
1.0
Jan 18, 2018
Enhancement
CLOSED
0
updated
Jan 18, 2018
Fix big data in all-vs-all mode
#106
· created
Jan 17, 2018
by
Floreal Cabanettes
1.0
Feb 2, 2018
Bug
CLOSED
2
updated
Feb 05, 2018
Clean session status links and job status links on clear sessions/jobs and periodically
#107
· created
Jan 19, 2018
by
Floreal Cabanettes
1.0
Jan 22, 2018
Bug
Won't fix
CLOSED
1
updated
Jan 23, 2018
Error: MySQL server has gone away
#108
· created
Jan 23, 2018
by
Floreal Cabanettes
1.0
Jan 26, 2018
Bug
CLOSED
4
updated
Jan 29, 2018
Run a job: if we choose a file, and then we switch to URL, the size of the file don't disappear
#109
· created
Jan 25, 2018
by
Floreal Cabanettes
1.0
Jan 25, 2018
Bug
CLOSED
0
updated
Jan 29, 2018
Download of query: remove contigs not present in the index
#110
· created
Jan 25, 2018
by
Floreal Cabanettes
1.0
Feb 2, 2018
Bug
CLOSED
1
updated
Jan 29, 2018
Summary: fail for big data: timeout
#111
· created
Jan 31, 2018
by
Floreal Cabanettes
1.0
Feb 2, 2018
Bug
CLOSED
0
updated
Jan 31, 2018
Add a table beside the gallery items with times and memory usage for all items
#112
· created
Jan 31, 2018
by
Floreal Cabanettes
1.0
Feb 2, 2018
Enhancement
CLOSED
0
updated
Feb 05, 2018
Summary stats failed on big data
#113
· created
Jan 31, 2018
by
Floreal Cabanettes
1.0
Feb 9, 2018
Bug
CLOSED
0
updated
Feb 02, 2018
Standalone version
#114
· created
Feb 08, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
New feature
CLOSED
0
updated
Feb 08, 2018
Windows compatibility
#115
· created
Feb 08, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
Done
Enhancement
CLOSED
1
updated
Feb 22, 2018
Remove "you will receive a mail...." on standalone version
#116
· created
Feb 14, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
Bug
CLOSED
0
updated
Feb 15, 2018
Standalone version: problem with treatments which requires mail
#117
· created
Feb 14, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
Bug
CLOSED
0
updated
Feb 16, 2018
Sometimes (on windows at least) flask is really long to start. Check flask is already started before launch the browser
#118
· created
Feb 14, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
Bug
CLOSED
0
updated
Feb 15, 2018
In standalone mode, load all jobs on startup to add them in the result menu
#119
· created
Feb 16, 2018
by
Floreal Cabanettes
1.0
Feb 20, 2018
New feature
CLOSED
0
updated
Feb 16, 2018
Add a button to delete a job
#120
· created
Feb 16, 2018
by
Floreal Cabanettes
1.0
Feb 20, 2018
New feature
CLOSED
0
updated
Feb 16, 2018
Check XSS and other security breaches
#121
· created
Feb 16, 2018
by
Floreal Cabanettes
1.0
Feb 23, 2018
Bug
CLOSED
0
updated
Feb 19, 2018
Query as reference: do we need to remove noise before
#122
· created
Feb 20, 2018
by
Floreal Cabanettes
Discussion
Won't fix
1
updated
Feb 21, 2018
Ease integration of a new tool
#123
· created
Mar 02, 2018
by
Floreal Cabanettes
1.1
Apr 6, 2018
Enhancement
CLOSED
2
0
updated
Apr 03, 2018
Add mashmap tool
#124
· created
Mar 02, 2018
by
Floreal Cabanettes
1.2
Enhancement
CLOSED
2
1
updated
Jul 12, 2018
Add analytics logs
#125
· created
Mar 14, 2018
by
Floreal Cabanettes
1.1
Mar 15, 2018
Enhancement
CLOSED
0
updated
Apr 03, 2018
Add alignment file as input instead of query and target
#126
· created
Apr 03, 2018
by
Floreal Cabanettes
1.1
Apr 6, 2018
New feature
CLOSED
1
1
updated
Apr 09, 2018
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