Merge branch 'chore/add-release-notes' into 'master'

Add news and perspectives page.

See merge request urgi-is/data-discovery!309

NEWS-RARe-fr.md

+# Nouveautés et perspectives
+
+## Nouveautés 2020
+
+### Ajout d'une fonctionnalité de panier
+
+Une instance dédiée du portail RARe a été mise en place avec la possibilité de commander des ressources génétiques. L'utilisateur est alors redirigé vers une application de commande dédiée qui le mettra en contact avec les gestionnaires d'accession concernés.
+
+## Perspectives 2021
+
+### Suivre le trafic sortant vers les bases de données partenaires
+
+Cette mesure permettra de retracer l'impact du portail de données RARe, et donc de promouvoir son utilisation.
+
+### Recherche par synonymes
+
+La recherche par taxon devrait utiliser les synonymes de 2 sources de données : [NCBI](https://www.ncbi.nlm.nih.gov/taxonomy) et [GnpIS](https://urgi.versailles.inrae.fr/siregal/common/taxon/results.do?thematic=all). Tout terme de recherche correspondant à un nom de taxon connu rechercherait également ses synonymes. Les synonymes correspondants seraient mis en évidence dans les résultats pour informer l'utilisateur du processus.
+
+### Affichage de la date de la dernière mise à jour des données
+
+Rendre le processus de chargement des données plus fluide et afficher la date de la dernière mise à jour des données dans l'interface web.
+
+## Perspectives à long terme
+
+### Permettre la recherche de phrases exactes
+
+Permettre la recherche de groupes de termes liés entre eux, par exemple "_fusariose de l'épi_". Actuellement, les trois termes sont recherchés indépendamment, ce qui entraîne un grand nombre de faux positifs.
+
+### Revoir le stockage des données
+
+Actuellement, les données sont stockées avec le code dans Git LFS. Nous prévoyons de revoir cette approche pour réduire le coût de stockage.
+
+### Téléchargement des résultats
+
+Ajouter une fonctionnalité de téléchargement permettant de récupérer les résultats dans un format tabulé et/ou JSON. Le nombre de résultats est à préciser.

NEWS-RARe.md

+# News & perspectives
+
+## News 2020
+
+### Add a basket feature
+A dedicated instance of the RARe portal has been implemented with the possibility to order genetic resources. The user is then redirected to a dedicated ordering application that will put him in touch with the relevant accession holders.
+
+## Perspectives 2021
+
+### Monitor outgoing traffic towards partner databases
+
+This metric will trace the impact of the RARe data portal, hence promoting its use.
+
+### Search by synonyms
+
+Search by taxon now uses synonyms from 2 data sources: [NCBI](https://www.ncbi.nlm.nih.gov/taxonomy) and [GnpIS](https://urgi.versailles.inrae.fr/siregal/common/taxon/results.do?thematic=all). Any search term matching a known taxon name also searches its synonyms. Matching synonyms are highlighted in the results to inform the user of the process.
+
+### Display date of last data update
+
+Make the data loading process smoothier and display the date of the last data update in the web interface.
+
+## Long term perspectives
+
+### Allow search for exact phrases
+
+Allow searching group of terms linked together, ie. "_fusarium head blight_". Currently, any of the 3 terms are searched independently, resulting in a lot of false positives.
+
+### Review the storage of data
+
+Currently the data is stored next to the code into Git LFS. We plan to review this approach to reduce the storage cost.
+
+### Download results
+
+Add a download feature allowing to get batch results in a tabulated and/or JSON format. Number of results to be clarified.

NEWS-WHEATIS.md

+# News & perspectives
+
+## News 2020
+
+### Dissemination 2020
+
+Two webinars presented the WheatIS DataDiscovery tool:
+
+1. On [February the 25th](https://urgi.versailles.inra.fr/About-us/News/WheatIS-webinar) (with a [replay available](https://urgi.versailles.inra.fr/About-us/News/WheatIS-webinar-replay)) under the umbrella of the WheatInitiative.
+2. On [October the 7th](https://urgi.versailles.inra.fr/About-us/News/WheatIS-DataDiscovery-webinar-on-AgBioData-conference) (with a [replay available](https://youtu.be/pSST0jepoRg)) for the AgBioData community.
+
+### Data updates 2020
+
+#### GrainGenes
+
+GrainGenes data has been updated with 3407 new QTL, and 58 genetic maps
+
+#### TheTriticeaeToolbox & Gramene (USDA)
+
+T3 data as well as Gramene got updated with respective latest releases
+
+#### Ensembl Plants
+
+Ensembl Genomes Plants has been updated up to releases 45 and 46, last new release is in the current roadmap.
+
+### New features 2020
+
+#### Ontologies
+
+Searching resources annotated with [Gene Ontology](http://geneontology.org/) terms is now offered through a dedicated facet. So far, only resources from Wheat literature are annotated, but we plan to extend this soon.
+
+#### Search by synonyms
+
+Search by taxon now uses synonyms from 2 data sources: [NCBI](https://www.ncbi.nlm.nih.gov/taxonomy) and [GnpIS](https://urgi.versailles.inrae.fr/GnpMap/common/taxon/results.do?thematic=all). Any search term matching a known taxon name also searches its synonyms. Matching synonyms are highlighted in the results to inform the user of the process.
+
+## Perspectives 2021
+
+### Add `Bioschemas.org` sources
+
+Web pages resources marked with [Bioschemas.org](https://bioschemas.org/) annotations will be indexed in the frame an [ELIXIR](https://elixir-europe.org/communities/plant-sciences) infrastructure [commissioned service](https://elixir-europe.org/activities/exploiting-bioschemas-markup-support-elixir-communities).
+
+### Add BrAPI data sources
+
+Resources and databases that offers a [Breeding API](https://brapi.org/) end point are currently indexable in [FAIDARE](https://urgi.versailles.inrae.fr/faidare/), the Elixir plant data lookup service. The WheatIS search and FAIDARE will be unified to ease the management of data sources, to bring Breeding API indexation to WheatIS and to ease development and maintenance.
+
+### Monitor outgoing traffic towards partner databases
+
+This metric will trace the impact of the WheatIS data portal, hence promoting its use.
+
+### Display date of last data update
+
+Make the data loading process smoothier and display the date of the last data update in the web interface.
+
+## Long term perspectives
+
+### Extend ontology annotation
+
+The [2020 ontology annotation feature](#ontologies) is expected to be extended to other kind of documents (any document containing a supported ontology term) as weel as using other ontologies (such as [Wheat Crop ontology](http://agroportal.lirmm.fr/ontologies/CO_321/), [Plant Ontology](http://agroportal.lirmm.fr/ontologies/PO) or [Wheat Trait and Phenotype Ontology](agroportal.lirmm.fr/ontologies/WHEATPHENOTYPE)).
+
+### Allow search for exact phrases
+
+Allow searching group of terms linked together, ie. "_fusarium head blight_". Currently, any of the 3 terms are searched independently, resulting in a lot of false positives.
+
+### Review the storage of data
+
+Currently the data is stored next to the code into Git LFS. We plan to review this approach to reduce the storage cost.
+
+### Download results
+
+Add a download feature allowing to get batch results in a tabulated and/or JSON format. Number of results to be clarified.

frontend/src/app/app.routes.ts

@@ -11,5 +11,6 @@ export const routes: Routes = [
   { path: 'join', component: MarkdownPageComponent, data: { mdFile: environment.joinUsMdFile } },
   { path: 'legal', component: MarkdownPageComponent, data: { mdFile: environment.legalMentionsMdFile } },
   { path: 'help', component: MarkdownPageComponent, data: { mdFile: environment.helpMdFile } },
+  { path: 'news', component: MarkdownPageComponent, data: { mdFile: environment.newsMdFile } },
   { path: 'eula', component: MarkdownPageComponent, data: { mdFile: environment.eulaMdFile } }
 ];

frontend/src/app/i18n/en.json

@@ -4,7 +4,8 @@
     "about": "About",
     "join-us": "Join us",
     "legal-mentions": "Terms of use",
-    "help": "Help"
+    "help": "Help",
+    "news": "News/Perspectives"
   },
   "pillars": {
     "no-data": "No data found.",

frontend/src/app/i18n/fr.json

@@ -4,7 +4,8 @@
     "about": "À propos",
     "join-us": "Contactez-nous",
     "legal-mentions": "Conditions d'utilisation",
-    "help": "Aide"
+    "help": "Aide",
+    "news": "Nouveautés/Perspectives (EN)"
   },
   "pillars": {
     "no-data": "Pas de donnée trouvée.",

frontend/src/app/navbar/navbar.component.html

@@ -36,6 +36,8 @@
               <a class="dropdown-item" routerLink="/legal" routerLinkActive="true" translate="navbar.legal-mentions"></a>
               <!-- Help link -->
               <a class="dropdown-item" routerLink="/help" routerLinkActive="true" translate="navbar.help"></a>
+              <!-- News link -->
+              <a class="dropdown-item" routerLink="/news" routerLinkActive="true" translate="navbar.news"></a>
             </div>
           </div>
         </li>

frontend/src/assets/data-discovery/news-en.md

+../../../../NEWS-WHEATIS.md
\ No newline at end of file

frontend/src/assets/data-discovery/news-fr.md

+../../../../NEWS-WHEATIS.md
\ No newline at end of file

frontend/src/assets/rare/news-en.md

+../../../../NEWS-RARe.md
\ No newline at end of file

frontend/src/assets/rare/news-fr.md

+../../../../NEWS-RARe-fr.md
\ No newline at end of file

frontend/src/assets/wheatis/news-en.md

+../../../../NEWS-WHEATIS.md
\ No newline at end of file

frontend/src/assets/wheatis/news-fr.md

+../../../../NEWS-WHEATIS.md
\ No newline at end of file

frontend/src/environments/environment.data-discovery.prod.ts

@@ -17,6 +17,7 @@ export const environment = {
   aboutUsMdFile: 'assets/about.md',
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
+  newsMdFile: 'assets/news.md',
   eulaMdFile: 'assets/eula.md',
   dataProvider: 'Data providers',
   /**

frontend/src/environments/environment.data-discovery.ts

@@ -22,6 +22,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.

frontend/src/environments/environment.prod.ts

@@ -17,6 +17,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.

frontend/src/environments/environment.rare-with-basket.prod.ts

@@ -17,6 +17,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.

frontend/src/environments/environment.rare-with-basket.ts

@@ -17,6 +17,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.

frontend/src/environments/environment.rare.prod.ts

@@ -17,6 +17,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.

frontend/src/environments/environment.rare.ts

@@ -21,6 +21,7 @@ export const environment = {
   joinUsMdFile: 'assets/join.md',
   legalMentionsMdFile: 'assets/legal.md',
   eulaMdFile: 'assets/eula.md',
+  newsMdFile: 'assets/news.md',
   dataProvider: 'Data providers',
   /**
    * Map containing the list of the aggregations and their displayed name.