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Created by Philippe Ruiz@philipperuizContributor

no tax.tabe after generate phyloseq object

The tax_table is not save in the phyloseq object probably because tax_table(as.matrix(tax.table)) is missing in line 59.

work if we do physeq <- generate_phyloseq_fun(dada_res = dada_res, tax.table = tax_table(as.matrix(tax.tablecheck)), tree = tree, metadata = "./sample_metadata.csv")