- 21 Jun, 2022 1 commit
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Etienne Rifa authored
debugs add normalization option add clustering option remove aggregate and relative options
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- 17 Jun, 2022 1 commit
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Etienne Rifa authored
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- 14 Jun, 2022 2 commits
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Etienne Rifa authored
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Etienne Rifa authored
commit 320ecbdbb66701084c2b874c253945615a05c3e5 Author: Etienne Rifa <etienne.rifa[at]insa-toulouse.fr> Date: Tue Jun 14 18:17:22 2022 +0200 add argument maxEE commit 2f734195aa134d40061f47ccb35faef3a9b44b08 Merge: b3c4f6d fc75a3e2 Author: Etienne Rifa <etienne.rifa[at]insa-toulouse.fr> Date: Mon Jun 13 13:46:48 2022 +0200 Merge branch 'master' into 2205_dev commit b3c4f6df47fee5b38933c8746a3bd7fd7379684a Author: Etienne Rifa <etienne.rifa[at]insa-toulouse.fr> Date: Mon Jun 13 13:45:53 2022 +0200 fix res aov alpha + updatemetadata commit 99367be4 Author: Etienne Rifa <etienne.rifa[at]insa-toulouse.fr> Date: Wed Jun 1 17:22:31 2022 +0200 fixes
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- 13 Jun, 2022 1 commit
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Sebastien Theil authored
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- 19 Apr, 2022 1 commit
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Etienne Rifa authored
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- 04 Apr, 2022 2 commits
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Etienne Rifa authored
dada2_fun changes See merge request !4
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Etienne Rifa authored
dada2: add cutadapt to trim primers for all type of data fixes
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- 16 Feb, 2022 1 commit
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Etienne Rifa authored
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- 10 Feb, 2022 1 commit
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Etienne Rifa authored
when some samples don't pass filters
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- 03 Feb, 2022 2 commits
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Etienne Rifa authored
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Etienne Rifa authored
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- 21 Dec, 2021 3 commits
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Etienne Rifa authored
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Etienne Rifa authored
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Etienne Rifa authored
asvenn no need to specify levels when <= 7 dada fix single end mode orient sequences / search primers on reverse complement dada fix output name of filterandtrim step beta fix interpretation of factor to test
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- 06 Dec, 2021 1 commit
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Etienne Rifa authored
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- 25 Nov, 2021 2 commits
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Etienne Rifa authored
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Etienne Rifa authored
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- 15 Nov, 2021 1 commit
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Etienne Rifa authored
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- 09 Nov, 2021 5 commits
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Sebastien Theil authored
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Sebastien Theil authored
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Sebastien Theil authored
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Sebastien Theil authored
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Sebastien Theil authored
doing multiple plot.
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- 05 Nov, 2021 3 commits
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Etienne Rifa authored
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Etienne Rifa authored
add extension argument to inform R1 R2 pattern for paired data change amplicon argument to "cutadapt". set to TRUE and inform sequence primers to trim primers with cutadapt. add cutadapt step in singleend SOP (illumina/torrent).
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Etienne Rifa authored
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- 03 Nov, 2021 1 commit
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Etienne Rifa authored
fix message at ranomaly startup add message when no significant features in aggregate
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- 19 Oct, 2021 2 commits
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Etienne Rifa authored
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Etienne Rifa authored
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- 15 Oct, 2021 5 commits
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Etienne Rifa authored
update See merge request !3
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Etienne Rifa authored
bars: allow to keep sample order given by metadata alpha: suppress fdr for pairwise wilcox and legend display beta: plotly output
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Etienne Rifa authored
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Etienne Rifa authored
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Etienne Rifa authored
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- 01 Oct, 2021 3 commits
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Etienne Rifa authored
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Etienne Rifa authored
add secondary plot when cov argument is used
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Etienne Rifa authored
stats was done on raw table inducing NAs.
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- 17 Sep, 2021 2 commits
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Etienne Rifa authored
replace Fact argument by sample_labels boolean, allow user to display sample ids rather than group they belong for non splitted plot. autoorder argument to apply or not automatic ordering of groups.
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Etienne Rifa authored
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