GitLab

bars: allow to keep sample order given by metadata
alpha: suppress fdr for pairwise wilcox and legend display
beta: plotly output

add secondary plot when cov argument is used

stats was done on raw table inducing NAs.

replace Fact argument by sample_labels boolean, allow user to display sample ids rather than group they belong for non splitted plot.
autoorder argument to apply or not automatic ordering of groups.

add aggregate_top_taxa

debug coercing combination in to factor

beta_light allows to plot other ordination axis
close #13

bars_fun: add ylab argument
heatmap: add feature to use preformated phyloseq object, add table output that can be used to create boxplot with specific taxa with normalized abundances.

metacoder dependency
+ internal function

closes #14
comment plotArrow bug #15

multiple taxa manual filtering
issue raised by Olivier Navaud, thx!

# Conflicts:
#   R/assign_taxo_fun.R