Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
umrf
ranomaly
Commits
db9b8d06
Commit
db9b8d06
authored
Mar 10, 2021
by
Etienne Rifa
Browse files
last bug
parent
bebfbfe4
Pipeline
#27880
passed with stage
in 13 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
R/core_soft.R
View file @
db9b8d06
...
...
@@ -9,6 +9,8 @@
#' @param prev prevalence threshold of microbiome::core_members function
#'
#' @importFrom microbiome transform core_members
#'
#' @export
core_soft_fun
<-
function
(
data
=
NULL
,
fact
=
NULL
,
group
=
NULL
,
freq
=
0.001
,
prev
=
0.5
,
rank
=
"ASV"
){
...
...
@@ -63,6 +65,8 @@ core_soft_fun <- function(data = NULL, fact = NULL, group = NULL, freq = 0.001,
#'
#' @param inlist Output of core_soft_fun() function
#' @param part which part of microbiome to output (core, soft or transit)
#'
#' @export
list_venn_fun
<-
function
(
inlist
=
NULL
,
part
=
"core"
){
if
(
!
any
(
part
==
c
(
"core"
,
"soft"
,
"transit"
))){
stop
(
"Choose 'core', 'soft' or 'transit' for 'part' argument"
)}
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment