From f15637907af6896e536791c107ee4f10a6f39335 Mon Sep 17 00:00:00 2001
From: Helene Rimbert <helene.rimbert@inra.fr>
Date: Tue, 24 Nov 2020 14:52:56 +0100
Subject: [PATCH] Update preprocessGenomes.smk
---
rules/preprocessGenomes.smk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rules/preprocessGenomes.smk b/rules/preprocessGenomes.smk
index 5c67eec..3b9d80b 100644
--- a/rules/preprocessGenomes.smk
+++ b/rules/preprocessGenomes.smk
@@ -17,7 +17,7 @@ rule splitGffPerChrom:
params: "chr{chrom}"
shell:
"""
- fgrep {params} {input} 1> {output} 2> {log}
+ fgrep -i {params} {input} 1> {output} 2> {log}
"""
rule indexQuery:
--
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