From 34abf1a4e4714cb71571a87b06ffc82737a1f6ad Mon Sep 17 00:00:00 2001
From: Helene Rimbert <helene.rimbert@inra.fr>
Date: Mon, 4 May 2020 14:51:07 +0200
Subject: [PATCH] BUG: remove option -w in fgrep which causes grep of genes
from Unknown chromosome to fail
---
rules/preprocessISBP.smk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rules/preprocessISBP.smk b/rules/preprocessISBP.smk
index 00db38e..42e6672 100644
--- a/rules/preprocessISBP.smk
+++ b/rules/preprocessISBP.smk
@@ -33,5 +33,5 @@ rule splitISBP:
params: 'Chr{chrom}'
shell:
"""
- fgrep -w {params} {input} 1> {output} 2> {log}
+ fgrep {params} {input} 1> {output} 2> {log}
"""
--
GitLab