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Package: mapMCDA
Title: Produce an epidemiological risk map by weighting multiple risk
factors
Version: 0.4.19
Version: 0.4.23
Date: 2020-04-11
Authors@R: c( person("Andrea", "Apolloni", email =
"andrea.apolloni@cirad.fr", role = c("ctb"), comment = "Animal
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[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Travis Build Status](https://travis-ci.org/Cirad-ASTRE/mapMCDA.svg?branch=master)](https://travis-ci.org/Cirad-ASTRE/mapMCDA)
[![Appveyor Build status](https://ci.appveyor.com/api/projects/status/nuo6t1hddibxxusd?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
[![Appveyor Build status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
# mapMCDA <img src="man/figures/logo.png" align="right" />
......
[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA) [![Travis Build Status](https://travis-ci.org/Cirad-ASTRE/mapMCDA.svg?branch=master)](https://travis-ci.org/Cirad-ASTRE/mapMCDA) [![Appveyor Build status](https://ci.appveyor.com/api/projects/status/nuo6t1hddibxxusd?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Travis Build
Status](https://travis-ci.org/Cirad-ASTRE/mapMCDA.svg?branch=master)](https://travis-ci.org/Cirad-ASTRE/mapMCDA)
[![Appveyor Build
status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
mapMCDA <img src="man/figures/logo.png" align="right" />
========================================================
# mapMCDA <img src="man/figures/logo.png" align="right" />
![](man/figures/mapMCDA_overview.png)
`mapMCDA` helps producing **risk maps** by weighting **risk factors** using **expert knowledge**.
`mapMCDA` helps producing **risk maps** by weighting **risk factors**
using **expert knowledge**.
The typical use case is the lack of (reliable) data about the epidemics of a disease, but available information about well known **risk factors** (e.g. animal density, proximity to border, proximity to water courses, etc.).
The typical use case is the lack of (reliable) data about the epidemics
of a disease, but available information about well known **risk
factors** (e.g. animal density, proximity to border, proximity to water
courses, etc.).
In order to design a **stratified sampling** or a **surveillance campaign**, a preliminar risk map based on expert judgement is required.
In order to design a **stratified sampling** or a **surveillance
campaign**, a preliminar risk map based on expert judgement is required.
This package (and method) provides a systematic and guided approach to build such maps.
This package (and method) provides a systematic and guided approach to
build such maps.
![](man/figures/plot-risk-unit-1.png)
The package include a Graphical User Interface (Shiny) that helps in processing and weighting risk factors.
The package include a Graphical User Interface (Shiny) that helps in
processing and weighting risk factors.
``` r
library(mapMCDA)
......@@ -25,37 +35,54 @@ mapMCDA_app()
![](man/figures/interface.png)
Installing the package
----------------------
## Installing the package
`mapMCDA` is on its way to CRAN. In the meanwhile, install from GitHub as follows.
`mapMCDA` is on its way to CRAN. In the meanwhile, install from GitLab
as
follows.
<!-- To install the current stable, CRAN version of the package, type: -->
<!-- ```{r install, eval = FALSE} -->
<!-- install.packages("mapMCDA") -->
<!-- ``` -->
<!-- To benefit from the latest features and bug fixes, install the development, *github* version of the package using: -->
<!-- To benefit from the latest features and bug fixes, install the development, version of the package using: -->
``` r
if (!require("remotes")) {
install.packages("remotes")
}
remotes::install_github("Cirad-ASTRE/mapMCDA")
remotes::install_gitlab("umr-astre/mapMCDA", host = "forgemia.inra.fr")
```
<!-- # Resources -->
<!-- ## Vignettes -->
<!-- An overview and examples of *mapMCDA* are provided in the vignettes: -->
<!-- ... -->
<!-- ## Websites -->
<!-- The following websites are available: -->
<!-- ... -->
Getting help online
-------------------
Bug reports and feature requests should be posted on *github* using the [*issue*](http://github.com/Cirad-ASTRE/mapMCDA/issues) system.
## Getting help online
Bug reports and feature requests should be posted on *GitLab* using the
[*issue*](http://forgemia.inra.fr/umr-astre/mapMCDA/issues) system.
For support, reach out in the [mapMCDA mailing list](https://listes.cirad.fr/sympa/info/mapmcda). Archives are of public access.
For support, reach out in the [mapMCDA mailing
list](https://listes.cirad.fr/sympa/info/mapmcda). Archives are of
public access.
Contributions are welcome via **pull requests**.
Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.
Please note that this project is released with a [Contributor Code of
Conduct](CONDUCT.md). By participating in this project you agree to
abide by its terms.
# DO NOT CHANGE the "init" and "install" sections below
# based on the devtools appveyor config
# For some documentation, see:
# https://github.com/krlmlr/r-appveyor
# Download script file from GitHub
init:
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$ErrorActionPreference = "Stop"
Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
Import-Module '..\appveyor-tool.ps1'
install:
ps: Bootstrap
cache:
- C:\RLibrary
# Adapt as necessary starting from here
environment:
global:
USE_RTOOLS: false
PKGTYPE: binary
NOT_CRAN: yes
NOT_CRAN: true
# env vars that may need to be set, at least temporarily, from time to time
# see https://github.com/krlmlr/r-appveyor#readme for details
# USE_RTOOLS: true
# R_REMOTES_STANDALONE: true
matrix:
- R_VERSION: stable
......@@ -31,6 +27,8 @@ environment:
#- R_VERSION: devel
# Adapt as necessary starting from here
build_script:
- travis-tool.sh install_deps
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......@@ -107,16 +107,16 @@
<div id="installing-the-package" class="section level2">
<h2 class="hasAnchor">
<a href="#installing-the-package" class="anchor"></a>Installing the package</h2>
<p><code>mapMCDA</code> is on its way to CRAN. In the meanwhile, install from GitHub as follows.</p>
<p><code>mapMCDA</code> is on its way to CRAN. In the meanwhile, install from GitLab as follows.</p>
<!-- To install the current stable, CRAN version of the package, type: -->
<!-- ```{r install, eval = FALSE} -->
<!-- install.packages("mapMCDA") -->
<!-- ``` -->
<!-- To benefit from the latest features and bug fixes, install the development, *github* version of the package using: -->
<!-- To benefit from the latest features and bug fixes, install the development, version of the package using: -->
<div class="sourceCode" id="cb2"><pre class="r"><span class="kw">if</span> (!<span class="fu"><a href="https://rdrr.io/r/base/library.html">require</a></span>(<span class="st">"remotes"</span>)) {
<span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html">install.packages</a></span>(<span class="st">"remotes"</span>)
}
<span class="kw pkg">remotes</span><span class="kw ns">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html">install_github</a></span>(<span class="st">"Cirad-ASTRE/mapMCDA"</span>)</pre></div>
<span class="kw pkg">remotes</span><span class="kw ns">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_gitlab.html">install_gitlab</a></span>(<span class="st">"umr-astre/mapMCDA"</span>, <span class="kw">host</span> <span class="kw">=</span> <span class="st">"forgemia.inra.fr"</span>)</pre></div>
<!-- # Resources -->
<!-- ## Vignettes -->
<!-- An overview and examples of *mapMCDA* are provided in the vignettes: -->
......@@ -128,7 +128,7 @@
<div id="getting-help-online" class="section level2">
<h2 class="hasAnchor">
<a href="#getting-help-online" class="anchor"></a>Getting help online</h2>
<p>Bug reports and feature requests should be posted on <em>github</em> using the <a href="http://github.com/Cirad-ASTRE/mapMCDA/issues"><em>issue</em></a> system.</p>
<p>Bug reports and feature requests should be posted on <em>GitLab</em> using the <a href="http://forgemia.inra.fr/umr-astre/mapMCDA/issues"><em>issue</em></a> system.</p>
<p>For support, reach out in the <a href="https://listes.cirad.fr/sympa/info/mapmcda">mapMCDA mailing list</a>. Archives are of public access.</p>
<p>Contributions are welcome via <strong>pull requests</strong>.</p>
<p>Please note that this project is released with a <a href="CONDUCT.html">Contributor Code of Conduct</a>. By participating in this project you agree to abide by its terms.</p>
......@@ -170,7 +170,7 @@
<ul class="list-unstyled">
<li><a href="https://cran.r-project.org/package=mapMCDA"><img src="http://www.r-pkg.org/badges/version/mapMCDA" alt="CRAN_Status_Badge"></a></li>
<li><a href="https://travis-ci.org/Cirad-ASTRE/mapMCDA"><img src="https://travis-ci.org/Cirad-ASTRE/mapMCDA.svg?branch=master" alt="Travis Build Status"></a></li>
<li><a href="https://ci.appveyor.com/project/famuvie/mapmcda"><img src="https://ci.appveyor.com/api/projects/status/nuo6t1hddibxxusd?svg=true" alt="Appveyor Build status"></a></li>
<li><a href="https://ci.appveyor.com/project/famuvie/mapmcda"><img src="https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true" alt="Appveyor Build status"></a></li>
</ul>
</div>
</div>
......
......@@ -79,7 +79,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.18</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.23</span>
</span>
</div>
......
......@@ -4,5 +4,5 @@ pkgdown_sha: ~
articles:
cmr_cartography-rmd: cmr_cartography-rmd.html
mapMCDA: mapMCDA.html
last_built: 2020-04-11T13:52Z
last_built: 2020-04-11T15:19Z
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