Commit 6342467b authored by Facundo Muñoz's avatar Facundo Muñoz ®️
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Migrate to Foregemia

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......@@ -35,7 +35,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......@@ -89,29 +89,35 @@
<div class="page-header"><h1 class="hasAnchor">
<a href="#mapmcda" class="anchor"></a>mapMCDA <img src="reference/figures/logo.png" align="right">
</h1></div>
<p><img src="reference/figures/mapMCDA_overview.png"></p>
<div class="figure">
<img src="reference/figures/mapMCDA_overview.png">
</div>
<p><code>mapMCDA</code> helps producing <strong>risk maps</strong> by weighting <strong>risk factors</strong> using <strong>expert knowledge</strong>.</p>
<p>The typical use case is the lack of (reliable) data about the epidemics of a disease, but available information about well known <strong>risk factors</strong> (e.g. animal density, proximity to border, proximity to water courses, etc.).</p>
<p>In order to design a <strong>stratified sampling</strong> or a <strong>surveillance campaign</strong>, a preliminar risk map based on expert judgement is required.</p>
<p>This package (and method) provides a systematic and guided approach to build such maps.</p>
<p><img src="reference/figures/plot-risk-unit-1.png"></p>
<div class="figure">
<img src="reference/figures/plot-risk-unit-1.png">
</div>
<p>The package include a Graphical User Interface (Shiny) that helps in processing and weighting risk factors.</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(mapMCDA)</a>
<a class="sourceLine" id="cb1-2" data-line-number="2"><span class="kw"><a href="reference/mapMCDA_app.html">mapMCDA_app</a></span>()</a></code></pre></div>
<p><img src="reference/figures/interface.png"></p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(mapMCDA)
<span class="kw"><a href="reference/mapMCDA_app.html">mapMCDA_app</a></span>()</code></pre></div>
<div class="figure">
<img src="reference/figures/interface.png">
</div>
<div id="installing-the-package" class="section level2">
<h2 class="hasAnchor">
<a href="#installing-the-package" class="anchor"></a>Installing the package</h2>
<p><code>mapMCDA</code> is on its way to CRAN. In the meanwhile, install from GitHub as follows.</p>
<p><code>mapMCDA</code> is on its way to CRAN. In the meanwhile, install from GitLab as follows.</p>
<!-- To install the current stable, CRAN version of the package, type: -->
<!-- ```{r install, eval = FALSE} -->
<!-- install.packages("mapMCDA") -->
<!-- ``` -->
<!-- To benefit from the latest features and bug fixes, install the development, *github* version of the package using: -->
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb2-1" data-line-number="1"><span class="cf">if</span> (<span class="op">!</span><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">require</a></span>(<span class="st">"remotes"</span>)) {</a>
<a class="sourceLine" id="cb2-2" data-line-number="2"> <span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"remotes"</span>)</a>
<a class="sourceLine" id="cb2-3" data-line-number="3">}</a>
<a class="sourceLine" id="cb2-4" data-line-number="4">remotes<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/remotes/topics/install_github">install_github</a></span>(<span class="st">"Cirad-ASTRE/mapMCDA"</span>)</a></code></pre></div>
<!-- To benefit from the latest features and bug fixes, install the development, version of the package using: -->
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">if (!<span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">require</a></span>(<span class="st">"remotes"</span>)) {
<span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"remotes"</span>)
}
remotes::<span class="kw"><a href="https://www.rdocumentation.org/packages/remotes/topics/install_gitlab">install_gitlab</a></span>(<span class="st">"umr-astre/mapMCDA"</span>, <span class="dt">host =</span> <span class="st">"forgemia.inra.fr"</span>)</code></pre></div>
<!-- # Resources -->
<!-- ## Vignettes -->
<!-- An overview and examples of *mapMCDA* are provided in the vignettes: -->
......@@ -123,7 +129,7 @@
<div id="getting-help-online" class="section level2">
<h2 class="hasAnchor">
<a href="#getting-help-online" class="anchor"></a>Getting help online</h2>
<p>Bug reports and feature requests should be posted on <em>github</em> using the <a href="http://github.com/Cirad-ASTRE/mapMCDA/issues"><em>issue</em></a> system.</p>
<p>Bug reports and feature requests should be posted on <em>GitLab</em> using the <a href="http://forgemia.inra.fr/umr-astre/mapMCDA/issues"><em>issue</em></a> system.</p>
<p>For support, reach out in the <a href="https://listes.cirad.fr/sympa/info/mapmcda">mapMCDA mailing list</a>. Archives are of public access.</p>
<p>Contributions are welcome via <strong>pull requests</strong>.</p>
<p>Please note that this project is released with a <a href="CONDUCT.html">Contributor Code of Conduct</a>. By participating in this project you agree to abide by its terms.</p>
......@@ -135,7 +141,7 @@
<div class="links">
<h2>Links</h2>
<ul class="list-unstyled">
<li>Report a bug at <br><a href="https://github.com/Cirad-ASTRE/mapMCDA/issues">https://​github.com/​Cirad-ASTRE/​mapMCDA/​issues</a>
<li>Report a bug at <br><a href="https://forgemia.inra.fr/umr-astre/mapMCDA/issues">https://​forgemia.inra.fr/​umr-astre/​mapMCDA/​issues</a>
</li>
</ul>
</div>
......
......@@ -63,7 +63,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
pandoc: 2.3.1
pandoc: 1.16.0.2
pkgdown: 1.3.0
pkgdown_sha: ~
articles:
......
......@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -67,7 +67,7 @@ Pairwise Comparison Method (Saaty 1987, Saaty 1996, Malczewski 1999)" />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -66,7 +66,7 @@ number of fields, or fails." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......@@ -125,7 +125,7 @@
</div>
<pre class="usage"><span class='fu'>distance_map</span>(<span class='no'>x</span>, <span class='no'>boundaries</span>, <span class='kw'>res</span> <span class='kw'>=</span> <span class='fu'><a href='resolution.html'>resolution</a></span>(<span class='no'>boundaries</span>, <span class='kw'>min_ncells</span> <span class='kw'>=</span>
<pre class="usage"><span class='fu'>distance_map</span>(<span class='no'>x</span>, <span class='no'>boundaries</span>, <span class='kw'>res</span> <span class='kw'>=</span> <span class='fu'><a href='resolution.html'>resolution</a></span>(<span class='no'>boundaries</span>, <span class='kw'>max_ncells</span> <span class='kw'>=</span>
<span class='fl'>100</span>))</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
......
......@@ -66,7 +66,7 @@ within the limits of a given mask." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
......@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.13</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.14</span>
</span>
</div>
......
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