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README.Rmd
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......@@ -2,11 +2,11 @@
output: github_document
---
<!-- badges: start -->
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Build status](https://forgemia.inra.fr/umr-astre/mapMCDA/badges/master/pipeline.svg)](https://forgemia.inra.fr/umr-astre/mapMCDA/pipelines)
[![Appveyor Build status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
<!-- badges: end -->
# mapMCDA <img src="man/figures/logo.png" align="right" />
......
README.md
View file @ 3bbc058d
[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Build status](https://forgemia.inra.fr/umr-astre/mapMCDA/badges/master/pipeline.svg)](https://forgemia.inra.fr/umr-astre/mapMCDA/pipelines)
<!-- badges: start -->
[![Appveyor Build status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Build
status](https://forgemia.inra.fr/umr-astre/mapMCDA/badges/master/pipeline.svg)](https://forgemia.inra.fr/umr-astre/mapMCDA/pipelines)
[![Appveyor Build
status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
<!-- badges: end -->
mapMCDA <img src="man/figures/logo.png" align="right" />
========================================================
# mapMCDA <img src="man/figures/logo.png" align="right" />
![](man/figures/mapMCDA_overview.png)
`mapMCDA` helps producing **risk maps** by weighting **risk factors** using **expert knowledge**.
`mapMCDA` helps producing **risk maps** by weighting **risk factors**
using **expert knowledge**.
The typical use case is the lack of (reliable) data about the epidemics of a disease, but available information about well known **risk factors** (e.g. animal density, proximity to border, proximity to water courses, etc.).
The typical use case is the lack of (reliable) data about the epidemics
of a disease, but available information about well known **risk
factors** (e.g. animal density, proximity to border, proximity to water
courses, etc.).
In order to design a **stratified sampling** or a **surveillance campaign**, a preliminar risk map based on expert judgement is required.
In order to design a **stratified sampling** or a **surveillance
campaign**, a preliminar risk map based on expert judgement is required.
This package (and method) provides a systematic and guided approach to build such maps.
This package (and method) provides a systematic and guided approach to
build such maps.
![](man/figures/plot-risk-unit-1.png)
The package include a Graphical User Interface (Shiny) that helps in processing and weighting risk factors.
The package include a Graphical User Interface (Shiny) that helps in
processing and weighting risk factors.
``` r
library(mapMCDA)
......@@ -29,16 +38,22 @@ mapMCDA_app()
![](man/figures/interface.png)
Installing the package
----------------------
## Installing the package
`mapMCDA` is on its way to CRAN. In the meanwhile, install from GitLab as follows.
`mapMCDA` is on its way to CRAN. In the meanwhile, install from GitLab
as
follows.
<!-- To install the current stable, CRAN version of the package, type: -->
<!-- ```{r install, eval = FALSE} -->
<!-- install.packages("mapMCDA") -->
<!-- ``` -->
<!-- To benefit from the latest features and bug fixes, install the development, version of the package using: -->
``` r
if (!require("remotes")) {
install.packages("remotes")
......@@ -47,19 +62,30 @@ remotes::install_gitlab("umr-astre/mapMCDA", host = "forgemia.inra.fr")
```
<!-- # Resources -->
<!-- ## Vignettes -->
<!-- An overview and examples of *mapMCDA* are provided in the vignettes: -->
<!-- ... -->
<!-- ## Websites -->
<!-- The following websites are available: -->
<!-- ... -->
Getting help online
-------------------
Bug reports and feature requests should be posted on *GitLab* using the [*issue*](http://forgemia.inra.fr/umr-astre/mapMCDA/issues) system.
## Getting help online
Bug reports and feature requests should be posted on *GitLab* using the
[*issue*](http://forgemia.inra.fr/umr-astre/mapMCDA/issues) system.
For support, reach out in the [mapMCDA mailing list](https://listes.cirad.fr/sympa/info/mapmcda). Archives are of public access.
For support, reach out in the [mapMCDA mailing
list](https://listes.cirad.fr/sympa/info/mapmcda). Archives are of
public access.
Contributions are welcome via **pull requests**.
Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.
Please note that this project is released with a [Contributor Code of
Conduct](CONDUCT.md). By participating in this project you agree to
abide by its terms.
pkgdown/index.md 0 → 100644
View file @ 3bbc058d
<!-- badges: start -->
[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/mapMCDA)](https://cran.r-project.org/package=mapMCDA)
[![Build
status](https://forgemia.inra.fr/umr-astre/mapMCDA/badges/master/pipeline.svg)](https://forgemia.inra.fr/umr-astre/mapMCDA/pipelines)
[![Appveyor Build
status](https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true)](https://ci.appveyor.com/project/famuvie/mapmcda)
<!-- badges: end -->
# mapMCDA <img src="man/figures/logo.png" align="right" />
![](man/figures/mapMCDA_overview.png)
`mapMCDA` helps producing **risk maps** by weighting **risk factors**
using **expert knowledge**.
The typical use case is the lack of (reliable) data about the epidemics
of a disease, but available information about well known **risk
factors** (e.g. animal density, proximity to border, proximity to water
courses, etc.).
In order to design a **stratified sampling** or a **surveillance
campaign**, a preliminar risk map based on expert judgement is required.
This package (and method) provides a systematic and guided approach to
build such maps.
![](man/figures/plot-risk-unit-1.png)
The package include a Graphical User Interface (Shiny) that helps in
processing and weighting risk factors.
``` r
library(mapMCDA)
mapMCDA_app()
```
![](man/figures/interface.png)
## Installing the package
`mapMCDA` is on its way to CRAN. In the meanwhile, install from GitLab
as
follows.
<!-- To install the current stable, CRAN version of the package, type: -->
<!-- ```{r install, eval = FALSE} -->
<!-- install.packages("mapMCDA") -->
<!-- ``` -->
<!-- To benefit from the latest features and bug fixes, install the development, version of the package using: -->
``` r
if (!require("remotes")) {
install.packages("remotes")
}
remotes::install_gitlab("umr-astre/mapMCDA", host = "forgemia.inra.fr")
```
<!-- # Resources -->
<!-- ## Vignettes -->
<!-- An overview and examples of *mapMCDA* are provided in the vignettes: -->
<!-- ... -->
<!-- ## Websites -->
<!-- The following websites are available: -->
<!-- ... -->
## Getting help online
Bug reports and feature requests should be posted on *GitLab* using the
[*issue*](http://forgemia.inra.fr/umr-astre/mapMCDA/issues) system.
For support, reach out in the [mapMCDA mailing
list](https://listes.cirad.fr/sympa/info/mapmcda). Archives are of
public access.
Contributions are welcome via **pull requests**.
Please note that this project is released with a [Contributor Code of
Conduct](CONDUCT.md). By participating in this project you agree to
abide by its terms.
public/404.html
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/CONDUCT.html
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/LICENSE-text.html
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/articles/animal_mobility.html
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/articles/cmr_cartography-rmd.html
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......@@ -38,7 +38,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......@@ -91,7 +91,7 @@
<h1 data-toc-skip>Collection and pre-processing of cartographic information for Cameroon</h1>
<h4 class="author">Facundo Muñoz</h4>
<h4 class="date">2020-04-19</h4>
<h4 class="date">2020-08-30</h4>
<div class="hidden name"><code>cmr_cartography-rmd.Rmd</code></div>
......@@ -106,21 +106,20 @@
<span class="co">#&gt; Loading required package: sp</span>
<span class="fu"><a href="https://rdrr.io/r/base/library.html">require</a></span>(<span class="no">rgdal</span>)
<span class="co">#&gt; Loading required package: rgdal</span>
<span class="co">#&gt; rgdal: version: 1.4-8, (SVN revision 845)</span>
<span class="co">#&gt; Geospatial Data Abstraction Library extensions to R successfully loaded</span>
<span class="co">#&gt; Loaded GDAL runtime: GDAL 3.0.2, released 2019/10/28</span>
<span class="co">#&gt; Path to GDAL shared files: </span>
<span class="co">#&gt; GDAL binary built with GEOS: TRUE </span>
<span class="co">#&gt; Loaded PROJ.4 runtime: Rel. 6.2.1, November 1st, 2019, [PJ_VERSION: 621]</span>
<span class="co">#&gt; Path to PROJ.4 shared files: (autodetected)</span>
<span class="co">#&gt; Linking to sp version: 1.4-1</span>
<span class="co">#&gt; rgdal: version: 1.5-8, (SVN revision 990)</span>
<span class="co">#&gt; Geospatial Data Abstraction Library extensions to R successfully loaded</span>
<span class="co">#&gt; Loaded GDAL runtime: GDAL 3.0.2, released 2019/10/28</span>
<span class="co">#&gt; Path to GDAL shared files: /usr/share/gdal</span>
<span class="co">#&gt; GDAL binary built with GEOS: TRUE </span>
<span class="co">#&gt; Loaded PROJ runtime: Rel. 6.2.1, November 1st, 2019, [PJ_VERSION: 621]</span>
<span class="co">#&gt; Path to PROJ shared files: /usr/share/proj</span>
<span class="co">#&gt; Linking to sp version:1.4-2</span>
<span class="co">#&gt; To mute warnings of possible GDAL/OSR exportToProj4() degradation,</span>
<span class="co">#&gt; use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.</span>
<span class="kw">if</span>(!<span class="fu"><a href="https://rdrr.io/r/base/library.html">require</a></span>(<span class="no">mapview</span>, <span class="kw">quietly</span> <span class="kw">=</span> <span class="fl">TRUE</span>))
<span class="fu"><a href="https://rdrr.io/r/base/cat.html">cat</a></span>(<span class="st">"We suggest installing the pacakge mapview for interactive visualisation"</span>,
<span class="st">"of cartography from within R"</span>)
<span class="co">#&gt; Warning in library(package, lib.loc = lib.loc, character.only = TRUE,</span>
<span class="co">#&gt; logical.return = TRUE, : there is no package called 'mapview'</span>
<span class="co">#&gt; We suggest installing the pacakge mapview for interactive visualisation of cartography from within R</span></pre></body></html></div>
<span class="st">"of cartography from within R"</span>)</pre></body></html></div>
<div id="administrative-borders" class="section level2">
<h2 class="hasAnchor">
<a href="#administrative-borders" class="anchor"></a>Administrative borders</h2>
......
public/articles/index.html
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......@@ -79,7 +79,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/articles/mapMCDA.html
View file @ 3bbc058d
......@@ -38,7 +38,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......@@ -90,7 +90,7 @@
<div class="page-header toc-ignore">
<h1 data-toc-skip>mapMCDA: aperçu du package</h1>
<h4 class="date">2020-04-19</h4>
<h4 class="date">2020-08-30</h4>
<div class="hidden name"><code>mapMCDA.Rmd</code></div>
......@@ -187,9 +187,16 @@ Mis en échelle directe ou inverse.
<span class="kw">scale_target</span> <span class="kw">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span>(<span class="fl">100</span>, <span class="fl">0</span>) <span class="co"># échelle renversée</span>
)
)</pre></body></html></div>
<pre><code>## Warning in proj4string(x): CRS object has comment, which is lost in output
## Warning in proj4string(x): CRS object has comment, which is lost in output
## Warning in proj4string(x): CRS object has comment, which is lost in output
## Warning in proj4string(x): CRS object has comment, which is lost in output</code></pre>
<p>On voudrait examiner les cartes de risque ainsi calculées. Mais pour cela, il faut qu’elles soient <em>alignées</em>. C’est à dire, qu’elles aient les mêmes <em>extents</em>, <em>résolutions</em> et <em>projections</em>.</p>
<p>On peut se servir de la fonction <code><a href="../reference/align_layers.html">align_layers()</a></code> qui arrange tout ça pour nous. Noter que ce pas n’est pas nécessaire pour continuer, car cette fonction est automatiquement executée si besoin.</p>
<div class="sourceCode" id="cb15"><html><body><pre class="r"><span class="no">risques_alignes</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/align_layers.html">align_layers</a></span>(<span class="no">risques</span>)
<div class="sourceCode" id="cb16"><html><body><pre class="r"><span class="no">risques_alignes</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/align_layers.html">align_layers</a></span>(<span class="no">risques</span>)
<span class="fu"><a href="https://rdrr.io/pkg/rasterVis/man/levelplot-methods.html">levelplot</a></span>(<span class="fu"><a href="https://rdrr.io/pkg/raster/man/stack.html">stack</a></span>(<span class="no">risques_alignes</span>))</pre></body></html></div>
<div class="figure">
<img src="mapMCDA_files/figure-html/align-layers-1.png" alt="Niveaux de risque associé à chaque facteur." width="576"><p class="caption">
......@@ -202,7 +209,7 @@ Niveaux de risque associé à chaque facteur.
<a href="#pond%C3%A9ration-des-facteurs-de-risque" class="anchor"></a>3. Pondération des facteurs de risque</h1>
<p>Il y a 3 facteurs à considérer. Il faut comparer 2-à-2 leurs importances relatives en une échelle de 1 à 9 et representer ces rélations en une matrice qui doit avoir des 1 dans son diagonale.</p>
<p>Noter que les élements symmetriques doivent être réciproques.</p>
<div class="sourceCode" id="cb16"><html><body><pre class="r"><span class="no">M</span> <span class="kw">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/matrix.html">matrix</a></span>(<span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span>(
<div class="sourceCode" id="cb17"><html><body><pre class="r"><span class="no">M</span> <span class="kw">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/matrix.html">matrix</a></span>(<span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span>(
<span class="fl">1</span>, <span class="fl">6</span>, <span class="fl">4</span>,
<span class="fl">1</span>/<span class="fl">6</span>, <span class="fl">1</span>, <span class="fl">3</span>,
<span class="fl">1</span>/<span class="fl">4</span>, <span class="fl">1</span>/<span class="fl">3</span>, <span class="fl">1</span>
......@@ -239,7 +246,7 @@ Niveaux de risque associé à chaque facteur.
</table>
<p>Dans cette exemple, on considère que la densité animale est 6 fois plus importante que la distance aux points d’eau, et 4 fois plus importante que la distance aux parcs. Au même temps, que la distance aux points d’eau est 3 fois plus importante que celle aux parcs.</p>
<p>Le système calcule les coefficients de pondération les plus consistents avec ces valorations par paires, avec la fonction <code><a href="../reference/compute_weights.html">compute_weights()</a></code>.</p>
<div class="sourceCode" id="cb17"><html><body><pre class="r"><span class="no">w</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/compute_weights.html">compute_weights</a></span>(<span class="no">M</span>)</pre></body></html></div>
<div class="sourceCode" id="cb18"><html><body><pre class="r"><span class="no">w</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/compute_weights.html">compute_weights</a></span>(<span class="no">M</span>)</pre></body></html></div>
<div class="figure">
<img src="mapMCDA_files/figure-html/compute-weights-1.png" alt="Pondération des facteurs de risque." width="384"><p class="caption">
Pondération des facteurs de risque.
......@@ -250,7 +257,7 @@ Pondération des facteurs de risque.
<h1 class="hasAnchor">
<a href="#calcul-de-la-carte-de-risque" class="anchor"></a>4. Calcul de la carte de risque</h1>
<p>La fonction <code><a href="../reference/wlc.html">wlc()</a></code> (pour weighted linear combination) combine tous les facteurs de risque en utilisant les poids calculés précedament, et produise une carte de risque qui couvre toute la région.</p>
<div class="sourceCode" id="cb18"><html><body><pre class="r"><span class="no">risque_combine</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/wlc.html">wlc</a></span>(<span class="no">risques</span>, <span class="no">w</span>)
<div class="sourceCode" id="cb19"><html><body><pre class="r"><span class="no">risque_combine</span> <span class="kw">&lt;-</span> <span class="fu"><a href="../reference/wlc.html">wlc</a></span>(<span class="no">risques</span>, <span class="no">w</span>)
<span class="fu"><a href="https://rdrr.io/pkg/rasterVis/man/levelplot-methods.html">levelplot</a></span>(<span class="no">risque_combine</span>)</pre></body></html></div>
<div class="figure">
<img src="mapMCDA_files/figure-html/wlc-1.png" alt="Carte de risque combiné." width="576"><p class="caption">
......@@ -258,7 +265,8 @@ Carte de risque combiné.
</p>
</div>
<p>Enfin, on peut produîre una carte par unité épidémiologique et dans une échelle de quelques niveaux de risque.</p>
<div class="sourceCode" id="cb19"><html><body><pre class="r"><span class="fu"><a href="../reference/risk_plot.html">risk_plot</a></span>(<span class="no">unites_epi</span>, <span class="fu"><a href="../reference/risk_unit.html">risk_unit</a></span>(<span class="no">risque_combine</span>, <span class="no">unites_epi</span>), <span class="kw">n</span> <span class="kw">=</span> <span class="fl">5</span>)</pre></body></html></div>
<div class="sourceCode" id="cb20"><html><body><pre class="r"><span class="fu"><a href="../reference/risk_plot.html">risk_plot</a></span>(<span class="no">unites_epi</span>, <span class="fu"><a href="../reference/risk_unit.html">risk_unit</a></span>(<span class="no">risque_combine</span>, <span class="no">unites_epi</span>), <span class="kw">n</span> <span class="kw">=</span> <span class="fl">5</span>)</pre></body></html></div>
<pre><code>## Warning in proj4string(eu): CRS object has comment, which is lost in output</code></pre>
<div class="figure">
<img src="mapMCDA_files/figure-html/risk-plot-1.png" alt="Carte de niveaux de risque par unité épidémiologique." width="576"><p class="caption">
Carte de niveaux de risque par unité épidémiologique.
......
public/authors.html
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......@@ -79,7 +79,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/index.html
View file @ 3bbc058d
......@@ -42,7 +42,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......@@ -172,7 +172,7 @@
<h2>Dev status</h2>
<ul class="list-unstyled">
<li><a href="https://cran.r-project.org/package=mapMCDA"><img src="http://www.r-pkg.org/badges/version/mapMCDA" alt="CRAN_Status_Badge"></a></li>
<li><a href="https://travis-ci.org/Cirad-ASTRE/mapMCDA"><img src="https://travis-ci.org/Cirad-ASTRE/mapMCDA.svg?branch=master" alt="Travis Build Status"></a></li>
<li><a href="https://forgemia.inra.fr/umr-astre/mapMCDA/pipelines"><img src="https://forgemia.inra.fr/umr-astre/mapMCDA/badges/master/pipeline.svg" alt="Build status"></a></li>
<li><a href="https://ci.appveyor.com/project/famuvie/mapmcda"><img src="https://ci.appveyor.com/api/projects/status/5p751lpceeiy18kp?svg=true" alt="Appveyor Build status"></a></li>
</ul>
</div>
......
public/news/index.html
View file @ 3bbc058d
......@@ -79,7 +79,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.39</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......@@ -139,8 +139,19 @@
<h1 class="page-header" data-toc-text="0.4">
<a href="#mapmcda-0-4" class="anchor"></a>mapMCDA 0.4</h1>
<ul>
<li>
<p>Read network data.</p>
<ul>
<li><p>Filter national sub-network automatically (with warning) rather than stop on nodes off-boundaries. (#44)</p></li>
<li><p>Warn (instead of error) if all links are unidirectional. Danger: assuming directionality when in reality the data is non-directional. (#41)</p></li>
<li><p>Automatically aggregate volumes for multiple links (with warning, rather than error).</p></li>
<li><p>Stricter check consistency of nodes coordinates. Before, we checked (and errored) whether the same node had different coordinates. Check also for the same coordinates havind different nodes. It is likely a typo in the name of a locality, and we don’t want to treat them as different nodes.</p></li>
</ul>
</li>
<li><p>Accept grd/gri files as raster format.</p></li>
<li><p>New vignette: animal mobility file-format cheatsheet (<a href="https://umr-astre.pages.mia.inra.fr/mapMCDA/articles/animal_mobility.html" class="uri">https://umr-astre.pages.mia.inra.fr/mapMCDA/articles/animal_mobility.html</a>).</p></li>
<li><p>shiny interface v2 with several improvements (#8)</p></li>
<li><p>several bugfixes</p></li>
<li><p>several bug- and doc-fixes</p></li>
</ul>
</div>
<div id="mapmcda-0-3-0" class="section level1">
......
public/pkgdown.yml
View file @ 3bbc058d
......@@ -5,5 +5,5 @@ articles:
animal_mobility: animal_mobility.html
cmr_cartography-rmd: cmr_cartography-rmd.html
mapMCDA: mapMCDA.html
last_built: 2020-04-19T15:40Z
last_built: 2020-08-30T17:18Z
public/reference/align_layers.html
View file @ 3bbc058d
......@@ -80,7 +80,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/reference/borders0.html
View file @ 3bbc058d
......@@ -80,7 +80,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/reference/compute_weights.html
View file @ 3bbc058d
......@@ -82,7 +82,7 @@ Pairwise Comparison Method (Saaty 1987, Saaty 1996, Malczewski 1999)" />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/reference/csv_sep.html
View file @ 3bbc058d
......@@ -81,7 +81,7 @@ number of fields, or fails." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
public/reference/distance_map.html
View file @ 3bbc058d
......@@ -80,7 +80,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......@@ -171,7 +171,7 @@ the smallest dimension into 100 cells.</p></td>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'> <span class='no'>cmr</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mapMCDA_datasets.html'>mapMCDA_datasets</a></span>()
<span class='kw pkg'>raster</span><span class='kw ns'>::</span><span class='fu'><a href='https://rdrr.io/pkg/raster/man/plot.html'>plot</a></span>(<span class='fu'>distance_map</span>(<span class='no'>cmr</span>$<span class='no'>water_bodies</span>, <span class='kw'>boundaries</span> <span class='kw'>=</span> <span class='no'>cmr</span>$<span class='no'>cmr_admin3</span>))</div><div class='img'><img src='distance_map-1.png' alt='' width='700' height='433' /></div></pre>
<span class='kw pkg'>raster</span><span class='kw ns'>::</span><span class='fu'><a href='https://rdrr.io/pkg/raster/man/plot.html'>plot</a></span>(<span class='fu'>distance_map</span>(<span class='no'>cmr</span>$<span class='no'>water_bodies</span>, <span class='kw'>boundaries</span> <span class='kw'>=</span> <span class='no'>cmr</span>$<span class='no'>cmr_admin3</span>))</div><div class='output co'>#&gt; <span class='warning'>Warning: CRS object has comment, which is lost in output</span></div><div class='output co'>#&gt; <span class='warning'>Warning: CRS object has comment, which is lost in output</span></div><div class='img'><img src='distance_map-1.png' alt='' width='700' height='433' /></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top">
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public/reference/distance_to_vector.html
View file @ 3bbc058d
......@@ -81,7 +81,7 @@ within the limits of a given mask." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mapMCDA</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.38</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.4.53</span>
</span>
</div>
......
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