GitLab CI: test R-release

.gitlab-ci.yml

@@ -7,3 +7,32 @@ pages:
       - public
   only:
     - master
+
+# Use the shiny-verse Docker image for the run
+# (Includes, devtools, tidyverse, ...)
+# https://hub.docker.com/r/rocker/shiny-verse/
+image: rocker/shiny-verse
+
+## Use built-in GitLab CI environment variables
+## (https://docs.gitlab.com/ee/ci/variables/#predefined-variables-environment-variables)
+## CI_PROJECT_DIR: full path to where the repository is cloned
+## CI_PROJECT_NAME is the project folder name
+variables:
+  R_LIBS_USER: "$CI_PROJECT_DIR/ci/lib"
+  CHECK_DIR: "$CI_PROJECT_DIR/ci/logs"
+  BUILD_LOGS_DIR: "$CI_PROJECT_DIR/ci/logs/$CI_PROJECT_NAME.Rcheck"
+
+test:
+  script:
+  - mkdir -p $R_LIBS_USER $BUILD_LOGS_DIR
+  # system requirements
+  - apt-get install -y libv8-dev libjq-dev libprotobuf-dev protobuf-compiler libgdal-dev libproj-dev libudunits2-dev
+  - R -e 'devtools::install_deps(dep = T, lib = Sys.getenv("R_LIBS_USER"))'
+  - R -e 'devtools::check(check_dir = Sys.getenv("CHECK_DIR"))'
+  - R -e 'if (length(devtools::check_failures(path = Sys.getenv("BUILD_LOGS_DIR"), note = FALSE)) > 0) stop()'
+  cache:
+    paths:
+    - $R_LIBS_USER
+
+after_script:
+  - R -e 'covr::package_coverage(Sys.getenv("CI_PROJECT_DIR"))'

DESCRIPTION

 Package: mapMCDA
 Title: Produce an epidemiological risk map by weighting multiple risk
         factors
-Version: 0.4.29
+Version: 0.4.34
 Date: 2020-04-18
 Authors@R: c( person("Andrea", "Apolloni", email =
         "andrea.apolloni@cirad.fr", role = c("ctb"), comment = "Animal
@@ -30,7 +30,8 @@ Imports: classInt, deldir, geojsonio, geojsonlint, geonetwork, igraph,
         methods, maps, maptools, plyr, raster, rasterVis, RColorBrewer,
         rgdal, rgeos, rhandsontable, shiny, shinydashboard, shinyFiles,
         sp, stringr, utils
-Suggests: devtools, knitr, mapview, rmarkdown, roxygen2, testthat
+Suggests: covr, devtools, knitr, lintr, mapview, rmarkdown, roxygen2,
+        testthat
 RoxygenNote: 7.1.0
 URL: https://umr-astre.pages.mia.inra.fr/mapMCDA
 BugReports: https://forgemia.inra.fr/umr-astre/mapMCDA/issues