Commit 16996d1a authored by Jean-Benoist Leger's avatar Jean-Benoist Leger
Browse files

CI

parent 24a47e92
Pipeline #891 passed with stages
in 2 minutes and 22 seconds
^\.gitlab-ci\.yml
README.md$
^\.install-deps$
\.tar\.gz$
\.clang-format$
......@@ -2,3 +2,6 @@
*.so
.*.swp
.*.swo
LineImputer*.tar.gz
LineImputer*.Rcheck
image: jbleger/r4gitlabci
stages:
- build
- package
compile:
stage: build
script:
- ./.install-deps
- R CMD build .
- R CMD check LineImputer*.tar.gz
tags:
- runner
artifacts:
untracked: true
expire_in: 1 hour
package:
stage: package
script:
- echo "dummy"
tags:
- runner
artifacts:
expire_in: 1 year
paths:
- LineImputer*.tar.gz
- LineImputer.Rcheck
#!/bin/sh
grep '^Imports' DESCRIPTION | sed -r -e 's/\([^\(\)]*\)//g' -e 's/,//g' -e 's/^Imports: /install.packages(c("/g' -e 's/ /","/g' -e 's|$|"),repos="http://ftp.igh.cnrs.fr/pub/CRAN/")|' | R --no-save
# Package LineImputer
This package allows to merge and impute files. It contains three functions: `mergevcf`, `imputation` and `impThreshold`. The function `mergevcf` is designed for merging two or more, VCF files but it can be applied to other highly structured file types. The function `imputation` allows to predict the unknown values in VCF files. As distinct from the function `mergevcf` this function can be applied only to VCF files. The function `impThreshold` allows to process the files after imputation. This function can be applied only to VCF files.
# Download
Here, with [this link][thelink] you can access the latest package and the check
log build by the Continuous Integration.
[thelink][https://forgemia.inra.fr/tristan.mary-huard/LineImputer/builds/artifacts/master/browse?job=package]
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