In the Est plugin, if EST are incompatible,  for the same number of gaps select first the smallest covered region.

v3.2 released 17 Mar. 2005
-------------------------------------------------------------------

* change the use of the software:
        EUGENEDIR: environment variable updating with the eugene root repertory
        (default value /usr/share/eugene). This repertory contains repertories:
             - cfg (with eugene.par the default parameter file)
             - models (provided models)
             - doc (documentation)
             - plugins
             - web (to vizualize eugene HTML outputs)

* Allow MAC compilation

* no more need to call the CREATE_LINKS procedure.

* Tests as compilation are called in the root directory.

* HTML outputs reference local web directory and no more WEB in the current directory.

* Optimized parameter file is written in the current directory instead of the directory of the parameter file used
.

* New parameter Output.webdir indicating where to find files necessary to vizualize HTML outputs ('LOCAL' value to
 use the local web directory or a URL)