Release 4.1d: add MarkovIMM.CodingPot parameter. Value between 1 and 100. Allow to reduce coding potential (No effect if value=100)

./configure --enable-transl_table_6 => This option allows to compile EuGene to manage the codon translation table 6 (add initially for Ptet annotation)

Release 3.5d which fixs compilation errors due to g++ version 4.3 and integrates help to generated a new release.

Apres dicussion avec Jerome, les versions "stables" (released") recevront un n. de version sans lettre. Les versions avec lettres sont "non released". La version change necéssairement si le eugene.par change.

This will avoid the problem of the OSTYPE environment variable set to 'linux-gnu' instead of the expected 'linux'.

v3.2 released 17 Mar. 2005
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* change the use of the software:
        EUGENEDIR: environment variable updating with the eugene root repertory
        (default value /usr/share/eugene). This repertory contains repertories:
             - cfg (with eugene.par the default parameter file)
             - models (provided models)
             - doc (documentation)
             - plugins
             - web (to vizualize eugene HTML outputs)

* Allow MAC compilation

* no more need to call the CREATE_LINKS procedure.

* Tests as compilation are called in the root directory.

* HTML outputs reference local web directory and no more WEB in the current directory.

* Optimized parameter file is written in the current directory instead of the directory of the parameter file used
.

* New parameter Output.webdir indicating where to find files necessary to vizualize HTML outputs ('LOCAL' value to
 use the local web directory or a URL)