Commit f774dd0c authored by sallet's avatar sallet
Browse files

version 4.3 and change default altest params

parent 32b5e4e0
#################################################################
###################### GENERAL PARAMETERS #######################
#################################################################
EuGene.version 4.2c
EuGene.version 4.3
EuGene.organism Arabidopsis
EuGene.mode Eukaryote # Eukaryote or Prokaryote
EuGene.sloppy 0
......@@ -66,13 +66,13 @@ Output.webdir LOCAL # or URL: http://www.inra.fr/bia/T/EuGene/
#
##### Alternative splicing predictor control
AltEst.use 0
AltEst.IncompatibilityExonBorderMatchThreshold 20
AltEst.IncompatibilityExonBorderMatchThreshold 100
AltEst.ExonBorderMatchThreshold 0
AltEst.Penalty 1000
AltEst.includedEstFilter 1
AltEst.compatibleEstFilter 1
AltEst.unsplicedEstFilter 1
AltEst.extremeLengthFilter 1
AltEst.compatibleEstFilter 0
AltEst.unsplicedEstFilter 0
AltEst.extremeLengthFilter 0
AltEst.maxEstLength 10000
AltEst.minEstLength 100
AltEst.maxIn 10000
......@@ -80,7 +80,7 @@ AltEst.minIn 40
AltEst.maxEx 10000
AltEst.minEx 3
AltEst.exonucleasicLength 10
AltEst.RepredictMargin 16000
AltEst.RepredictMargin 1000
AltEst.altEstDisplay 0
AltEst.strandSpecific 1
AltEst.verbose 0
......
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