Commit c11ceed0 authored by sallet's avatar sallet
Browse files

comment new release

parent 8d668ea4
-------------------------------------------------------------------------------
v4.3 released June, 2021
v4.3 released July, 2021
-------------------------------------------------------------------------------
Use -k flag or AltEst.Reference to load a reference annotation and predict splicing variants. Improve performance to perform variant prediction.
- Use -k flag or AltEst.Reference to load a reference annotation and predict the splicing variants.
- Improve performance to perform the variant prediction.
- In the AltEst plugin, add the parameter 'AltEst.IncompatibilityExonBorderMatchThreshold'. EuGene will perform a
variant search only for the AltEst where one of the exons shows at one of its borders a difference of at least
x nucleotides with a reference gene.
- If AltEst is activated, create two files: one for the initial prediction (.gff3) and one also including the variants
(.variants.gff3)
-------------------------------------------------------------------------------
v4.2b released Sep. 2020
......
......@@ -8,12 +8,14 @@ Please send eugene bug reports to eugene-help@groupes.renater.fr
Version 4.3
* If AltEst plugin is activate, EuGene creates two files: one for the initial prediction
(.gff3) and one including the variant prediction (.variants.gff3)
* The -k option (equivalent to AltEst.reference=1) allows to predict splicing variants
from a reference annotation.
* New parameter 'AltEst.IncompatibilityExonBorderMatchThreshold'. EuGene will perform a
variant search only for the AltEst where one of the exons shows at one of its borders
a difference of at least x nucleotides with a reference gene.
* Improve performance of splicing variant prediction
* Allow to predict only variant from a reference annotation with the -k option
* If AltEst plugin is activate, create two files: one for the initial prediction and one for the variant prediction. (File with the suffix ".variants")
* New parameter 'AltEst.IncompatibilityExonBorderMatchThreshold'. Only AltEst with an exon showing
...his is the margin used to select the AtEst for which an alternative prediction would be launched.
An EST is considered a potential variant if one of its exon show a difference with a length upper or equals to that value with a reference gene.
Version 4.2b
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment