Commit 8ca00e03 authored by sallet's avatar sallet
Browse files

add a parameter for exonmatchborderthreshold for AltEst

parent e1a8c72d
......@@ -66,6 +66,7 @@ Output.webdir LOCAL # or URL: http://www.inra.fr/bia/T/EuGene/
#
##### Alternative splicing predictor control
AltEst.use 0
AltEst.IncompatibilityExonBorderMatchThreshold 20
AltEst.ExonBorderMatchThreshold 0
AltEst.Penalty 1000
AltEst.includedEstFilter 1
......@@ -81,7 +82,7 @@ AltEst.minEx 3
AltEst.exonucleasicLength 10
AltEst.RepredictMargin 16000
AltEst.altEstDisplay 0
AltEst.strandSpecific 0
AltEst.strandSpecific 1
AltEst.verbose 0
#AltEst.reference /path/of/gff3/reference/annotation
AltEst.format GFF3
......
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