diff --git a/build_pop.py b/build_pop.py index 7c6e70e3a42589431a6ae8570620bd944a9b0161..79d17efbcc136dd42b478a1f0bb70d93010eb6f3 100755 --- a/build_pop.py +++ b/build_pop.py @@ -380,7 +380,7 @@ def init(output_dir, force_outputdir, sv_list, nstretches, nb_inds, reference, p print("") except InputException as e: eprint(e) - return False + return -1 if quiet or confirm(deletions, sv_sim.variants): genotypes_for_inds = build_genotypes_vcf_list(deletions, output_vcf, haploid, force_polymorphism, nb_inds, tmp_dir, prg_path) @@ -390,6 +390,7 @@ def init(output_dir, force_outputdir, sv_list, nstretches, nb_inds, reference, p print("DONE!\n") else: print("Aborted!\n") + return 0 def main():