From 8cac68e89ee1a8ba279766d26668f460651df49d Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Mon, 26 Mar 2018 13:52:57 +0200
Subject: [PATCH] Fix argparse
---
build_results.py | 2 +-
lib | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/build_results.py b/build_results.py
index a25e243..278d7ab 100755
--- a/build_results.py
+++ b/build_results.py
@@ -53,7 +53,7 @@ description: Build results of the simulated data detection")
parser.add_argument('-t', '--true-vcf', type=str, required=True, help='VCF file containing the simulated deletions')
parser.add_argument('-f', '--filtered-vcf', type=str, required=False,
help='File listing VCF files containing the filtered results')
- parser.add_argument('-t', '--type', type="str", choices=ALLOW_VARIANTS, help="Type of variant")
+ parser.add_argument('-y', '--type', type=str, choices=ALLOW_VARIANTS, help="Type of variant")
parser.add_argument('--overlap_cutoff', type=float, default=0.5, help='cutoff for reciprocal overlap')
parser.add_argument('--left_precision', type=int, default=-1, help='left breakpoint precision')
parser.add_argument('--right_precision', type=int, default=-1, help='right breakpoint precision')
diff --git a/lib b/lib
index 280518a..3a61cc6 160000
--- a/lib
+++ b/lib
@@ -1 +1 @@
-Subproject commit 280518a443d37a579762928940355aafb571b671
+Subproject commit 3a61cc6f2f09a359375fba1beb573c88cce1bad6
--
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