From 794af2391147e2b38f80a68d6c3299354b51c292 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Mon, 26 Mar 2018 15:21:57 +0200
Subject: [PATCH] Fix paths
---
build_results.py | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/build_results.py b/build_results.py
index 42c7d57..4db3b8f 100755
--- a/build_results.py
+++ b/build_results.py
@@ -640,8 +640,8 @@ def print_results(nb_records, orphans, with_xlsx, output, do_genotype):
print("Results:")
print("")
print("TSV files:")
- print("\t- " + os.path.join(output, "results__sv_per_tools.tsv"))
- print("\t- " + os.path.join(output, "results__sv_diffs_per_tools.tsv"))
+ print("\t- " + os.path.join(output, "results_sv_per_tools.tsv"))
+ print("\t- " + os.path.join(output, "results_sv_diffs_per_tools.tsv"))
if do_genotype:
print("\t- " + os.path.join(output, "results_sv_genotypes_per_tools.tsv"))
print("\t- " + os.path.join(output, "results_sv_genotypes_quality_per_tools.tsv"))
@@ -900,14 +900,14 @@ def init(output, vcf_files, true_vcf, filtered_vcfs=None, type_v="del", overlap_
create_tsv_file(os.path.join(output, "results_sv_per_tools.tsv"), headers, cells,
nb_tools + (2 if filtered_records is not None else 1),
3, (2, nb_records + 2))
- create_tsv_file(os.path.join(output, "_sv_diffs_per_tools.tsv"), headers, cells,
+ create_tsv_file(os.path.join(output, "results_sv_diffs_per_tools.tsv"), headers, cells,
nb_tools + (2 if filtered_records is not None else 1),
3, (2 + nb_records + 3, nb_records * 2 + 5))
if do_genotype:
- create_tsv_file(os.path.join(output, "_sv_genotypes_per_tools.tsv"), headers, cells_gt,
+ create_tsv_file(os.path.join(output, "results_sv_genotypes_per_tools.tsv"), headers, cells_gt,
nb_tools + (2 if filtered_records is not None else 1),
nb_inds, (2, nb_records + 2))
- create_tsv_file(os.path.join(output, "_sv_genotypes_quality_per_tools.tsv"), headers, cells_gq,
+ create_tsv_file(os.path.join(output, "results_sv_genotypes_quality_per_tools.tsv"), headers, cells_gq,
nb_tools + (2 if filtered_records is not None else 1),
nb_inds, (2, nb_records + 2))
--
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