From 66b4bcfca3d4d1612dec9d76d08a2c0ca4487f3a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Flor=C3=A9al=20Cabanettes?= <floreal.cabanettes@inra.fr>
Date: Wed, 19 Apr 2017 16:12:18 +0200
Subject: [PATCH] Fix build pop for diploids
---
build_pop.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/build_pop.py b/build_pop.py
index bc4ec72..845660c 100755
--- a/build_pop.py
+++ b/build_pop.py
@@ -226,7 +226,7 @@ print("GENERATE RANDOM READS FOR EACH INDIVIDUAL FROM GENOME...\n")
# Generate reads for all individuals:
if not haploid:
cmd = str("{4}pirs/pirs simulate -z -x {3} -d -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
- "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix "
+ "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7}"
"-G {4}pirs/Profiles/GC-depth_Profiles/humNew.gcdep_100.dat -o {0} {1} {2}")
else:
cmd = str("{4}pirs/pirs simulate -z -x {3} -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
--
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