From 358f6d4c36ac72a82a01ba6c657e1316852e74ad Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Tue, 13 Jun 2017 15:51:29 +0200
Subject: [PATCH] xlsxwriter as optional dependency
---
build_results.py | 21 +++++++++++++++++----
1 file changed, 17 insertions(+), 4 deletions(-)
diff --git a/build_results.py b/build_results.py
index 6034a9c..cc4ba65 100755
--- a/build_results.py
+++ b/build_results.py
@@ -21,8 +21,6 @@ import string
import os
import re
-import xlsxwriter
-
import sys
prg_path = os.path.dirname(os.path.realpath(__file__))
sys.path.insert(0, os.path.join(prg_path, "lib"))
@@ -499,6 +497,13 @@ def create_xls_document(args, headers, filtered_records, nb_records, nb_inds, ce
:param cells_gq: cells for third sheet (genotype quality)
:param max_col_len: max content length for each column
"""
+
+ try:
+ import xlsxwriter
+ except ImportError:
+ print("Excel file not built: xslxwriter python module not installed")
+ return False
+
with xlsxwriter.Workbook(args.output + ".xslx") as workbook:
#################################
@@ -553,6 +558,16 @@ def create_xls_document(args, headers, filtered_records, nb_records, nb_inds, ce
def create_tsv_file(filename: str, headers: list, cells: dict, nb_tools: int, nb_per_tool: int, records_range: ()):
+ """
+ Create tabulated separated values file
+ :param filename: filename of the file
+ :param headers: headers of each sheet
+ :param cells: cells of the table to save
+ :param nb_tools: number of tools
+ :param nb_per_tool: number per tools
+ :param records_range: range of records to treat {tuple(2)}
+ :return:
+ """
# Init rows:
head = ["", headers[0]]
top_headers = {}
@@ -590,8 +605,6 @@ def create_tsv_file(filename: str, headers: list, cells: dict, nb_tools: int, nb
tsv_file.write(tsv)
-
-# noinspection PyUnresolvedReferences
def main():
# parse the command line args
args = get_args()
--
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