From 35108d71fcbd63656edbea2d015b81f0a0d6287a Mon Sep 17 00:00:00 2001
From: tfaraut <Thomas.Faraut@inra.fr>
Date: Wed, 17 May 2017 16:38:08 +0200
Subject: [PATCH] simplified sort
---
build_results.py | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/build_results.py b/build_results.py
index 6abdbb3..0c56469 100755
--- a/build_results.py
+++ b/build_results.py
@@ -129,7 +129,7 @@ def read_vcf_file(infile):
ids.append(record.id)
return SVSet, ids
-
+
def svsort(sv, records):
"""
Function to sort regions
@@ -139,8 +139,8 @@ def svsort(sv, records):
else:
first_tool = list(records[sv]["tools"].keys())[0]
start = str(records[sv]["tools"][first_tool]["start"])
- return int(records[sv]["chromosome"] + ("0" * (15 - len(start))) + start)
-
+ return start
+
def get_gt(geno, true_gt):
"""
@@ -679,7 +679,7 @@ def main():
filtered_records is not None,
nb_records, max_col_len, nb_inds)
- rec_keys = sorted(records.keys(), key=lambda x:svsort(x, records))
+ rec_keys = sorted(records.keys(), key=lambda x:(records[x]["chromosome"], svsort(x, records)))
####################
# BUILD BODY CELLS #
--
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