From 21e1c0c41574a9b0679a1241bf49a63dbd8cfce3 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 23 Mar 2018 16:56:40 +0100
Subject: [PATCH] Fix printer
---
build_pop.py | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/build_pop.py b/build_pop.py
index d859cf8..244cb60 100755
--- a/build_pop.py
+++ b/build_pop.py
@@ -605,9 +605,8 @@ def init(output_dir, force_outputdir, sv_list, nstretches, nb_inds, reference, p
ok = True
if genotypes is None:
if quiet:
- with open(os.path.join(output_dir, "confirm.txt"), "w") as log_file:
- printer_confirm = Print(stdout=log_file, stderr=stderr)
- ok = confirm(deletions, inversions, sv_sim.variants, printer_confirm, False)
+ printer_confirm = Print(stdout=os.path.join(output_dir, "confirm.txt"), stderr=stderr)
+ ok = confirm(deletions, inversions, sv_sim.variants, printer_confirm, False)
else:
ok = confirm(deletions, inversions, sv_sim.variants, printer_confirm)
if ok:
--
GitLab