From f7544daa97b5b4994d5cec22dcc1b1dbeb9841c1 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 3 Aug 2018 13:41:27 +0200
Subject: [PATCH] Remove bad wildcard
---
snakecnv/tools/pindel.snk | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/snakecnv/tools/pindel.snk b/snakecnv/tools/pindel.snk
index 74c5197..87f57fb 100644
--- a/snakecnv/tools/pindel.snk
+++ b/snakecnv/tools/pindel.snk
@@ -62,8 +62,8 @@ rule mergepindelbatches:
INV="{batch}/pindel/pindel_{chrom}_INV.gz",
TD="{batch}/pindel/pindel_{chrom}_TD.gz"
log:
- stdout = "{batch}/logs/pindel/{chrom}_{svtype}.o",
- stderr = "{batch}/logs/pindel/{chrom}_{svtype}.e",
+ stdout = "{batch}/logs/pindel/{chrom}.o",
+ stderr = "{batch}/logs/pindel/{chrom}.e",
threads:
1
shell:
--
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