diff --git a/cluster.yaml b/cluster.yaml index 53cc3976b2f5cd31ec8636f1fd8cd63e80f84470..b18784ed0c8d4417e725c6c5397d92598decc02c 100644 --- a/cluster.yaml +++ b/cluster.yaml @@ -51,8 +51,8 @@ bed2fasta: h_vmem: 16 bwamap: - time: "36:00:00" + time: "72:00:00" markduplicates: - mem: 32 - h_vmem: 32 + mem: 64 + h_vmem: 64 diff --git a/snakecnv/align.snk b/snakecnv/align.snk index d8067cc7b08c64257b3172d2a7698540586f6a5e..f634d623a0fe070da9e9d7b34ca54939c64b369a 100644 --- a/snakecnv/align.snk +++ b/snakecnv/align.snk @@ -48,7 +48,7 @@ rule bwamap: output: bam = temp("bwa/{sample}.bam") threads: - get_threads("bwamap", 4) + get_threads("bwamap", 8) log: stdout = "logs/map_{sample}.o", stderr = "logs/map_{sample}.e" @@ -91,4 +91,4 @@ rule markduplicate: """ picard MarkDuplicates I={input.bam} O={output.bam} M={output.metrics} REMOVE_DUPLICATES=true 1> {log.stdout} \ 2> {log.stderr}; - """ \ No newline at end of file + """