From c3d1baaa1eca501e48c84df2d8594c37ee596865 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 24 Aug 2018 18:08:53 +0200
Subject: [PATCH] Fix input
---
snakecnv/mergebatches.snk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakecnv/mergebatches.snk b/snakecnv/mergebatches.snk
index fe27bd6..58f9f8d 100644
--- a/snakecnv/mergebatches.snk
+++ b/snakecnv/mergebatches.snk
@@ -177,7 +177,7 @@ rule filtering:
rule summary:
input:
- "filtered/{svtype}/svtyper_{chrom}_{svtype}_genotypes_filtered.vcf.gz"
+ expand("filtered/{svtype}/svtyper_{chrom}_{svtype}_genotypes_filtered.vcf.gz", chrom=chromosomes, svtype=variant_types)
params:
tpl = os.path.join(ROOTPATH, "full.tpl")
output:
--
GitLab