From 3814f78e4257d40e003ad52f15b7ed89c1235479 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 3 Aug 2018 13:42:37 +0200
Subject: [PATCH] Remove bad wildcard
---
snakecnv/tools/pindel.snk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakecnv/tools/pindel.snk b/snakecnv/tools/pindel.snk
index 87f57fb..bbdf1e4 100644
--- a/snakecnv/tools/pindel.snk
+++ b/snakecnv/tools/pindel.snk
@@ -70,4 +70,4 @@ rule mergepindelbatches:
"mergepindelbatches.py {output.D} {input.D} 1>{log.stdout} 2>{log.stderr}; "
"mergepindelbatches.py {output.INV} {input.INV} 1>>{log.stdout} 2>>{log.stderr}; "
"mergepindelbatches.py {output.TD} {input.TD} 1>>{log.stdout} 2>>{log.stderr}; "
- "rm -rf {wildcards.batch}/pindel/{wildcards.chrom}_{wildcards.svtype}"
\ No newline at end of file
+ "rm -rf {wildcards.batch}/pindel/{wildcards.chrom}"
\ No newline at end of file
--
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