Commits · master · seqOccIn / axis3-metagenomics-amplicon

10 May, 2021 1 commit
- script to filter ecopcr result file · bc34b5bd
  Jean Mainguy authored May 10, 2021
  
  bc34b5bd
26 Mar, 2021 5 commits
- clean script · badec1b4
  Jean Mainguy authored Mar 26, 2021
  
  badec1b4
- Merge branch 'dev' of forgemia.inra.fr:seqoccin/axis3-metagenomics-amplicon into dev · 9605fefe
  Jean Mainguy authored Mar 26, 2021
  
  9605fefe
- update readme · 040fa4ac
  Jean Mainguy authored Mar 26, 2021
  
  040fa4ac
- using all_assemblies.tsv instead of all_assemblies_with_taxonomy.tsv · 4ca8f39a
  Jean Mainguy authored Mar 26, 2021
  
  4ca8f39a
- jupyter update · 19a4882a
  Jean Mainguy authored Mar 26, 2021
  
  19a4882a
18 Mar, 2021 1 commit
- Update README.md · 48329ee9
  Jean Mainguy authored Mar 18, 2021
  
  48329ee9
20 Jan, 2021 9 commits
- improve config · e803786a
  Jean Mainguy authored Jan 20, 2021
  
  e803786a
- cleaning old files · 02bea222
  Jean Mainguy authored Jan 20, 2021
  
  02bea222
- add small readme in frogs db · 847ceebe
  Jean Mainguy authored Jan 20, 2021
  
  847ceebe
- bash script to build frogs db · e8c5cde7
  Jean Mainguy authored Jan 20, 2021
  
  e8c5cde7
- update · 0d3a0358
  Jean Mainguy authored Jan 20, 2021
  
  0d3a0358
- update notebook · fee72dc4
  Jean Mainguy authored Jan 20, 2021
  
  fee72dc4
- improve genome download · 18bce388
  Jean Mainguy authored Jan 20, 2021
  
  18bce388
- renaming · 82537593
  Jean Mainguy authored Jan 20, 2021
  
  82537593
- update · 13f5cbff
  Jean Mainguy authored Jan 20, 2021
  
  13f5cbff
03 Dec, 2020 2 commits
- clean taxo to match frogs requirements · dfba0c2c
  Jean Mainguy authored Dec 03, 2020
  
  dfba0c2c
- python script to produce sequence for frogs db · 84c336d6
  Jean Mainguy authored Dec 03, 2020
  
  84c336d6
30 Nov, 2020 1 commit
- simple script to get fasta id taxonomy · b714b1b6
  Jean Mainguy authored Nov 30, 2020
  
  b714b1b6
18 Nov, 2020 3 commits
- clean genologin conda profile with a uniq conda env · 20c8eb00
  Jean Mainguy authored Nov 18, 2020
  
  20c8eb00
- clean workflow conda env · 22254fb1
  Jean Mainguy authored Nov 18, 2020
  
  22254fb1
- add perlib trick to prevent perl crashing · 97d543e8
  Jean Mainguy authored Nov 18, 2020
  
  97d543e8
02 Nov, 2020 1 commit
- recovering content · 38c30d43
  Jean Mainguy authored Nov 02, 2020
  
  38c30d43
29 Oct, 2020 2 commits
- add conda env and create bin dir · ddf261d1
  Jean Mainguy authored Oct 29, 2020
  
  ddf261d1
- correct typo · 94d39a65
  Jean Mainguy authored Oct 29, 2020
  
  94d39a65
27 Oct, 2020 4 commits
- improve logging · 16dca09b
  Jean Mainguy authored Oct 27, 2020
  
  16dca09b
- fixing typo · a50fa33d
  Jean Mainguy authored Oct 27, 2020
  
  a50fa33d
- add possibility to filter assembly with a list of taxids. · 42ddfc84
  Jean Mainguy authored Oct 27, 2020
  
  42ddfc84
- add separated script to translate taxon name to taxid · cbaec51f
  Jean Mainguy authored Oct 27, 2020
  
  cbaec51f
26 Oct, 2020 2 commits
- add flexible cogs selections · 1daabe14
  Jean Mainguy authored Oct 26, 2020
  
  1daabe14
- update · 87e8d373
  Jean Mainguy authored Oct 26, 2020
  
  87e8d373
07 Oct, 2020 7 commits
- add clearer header · cf60fa65
  Jean Mainguy authored Oct 07, 2020
  
  cf60fa65
- renaming · 26fca6dc
  Jean Mainguy authored Oct 07, 2020
  
  26fca6dc
- renaming · f7bd9676
  Jean Mainguy authored Oct 07, 2020
  
  f7bd9676
- update · 4a9708f1
  Jean Mainguy authored Oct 07, 2020
  
  4a9708f1
- Merge branch 'flexible_workflow' of... · cffd46c2
  Jean Mainguy authored Oct 07, 2020
```
Merge branch 'flexible_workflow' of forgemia.inra.fr:seqoccin/axis3-metagenomics into flexible_workflow
```
  cffd46c2
- readme of flexible workflow · 1fc03f11
  Jean Mainguy authored Oct 07, 2020
  
  1fc03f11
- rename and relocate param.assemblies_chunk_size · 2481d7fd
  Jean Mainguy authored Oct 07, 2020
  
  2481d7fd
06 Oct, 2020 2 commits
- add +1 to assembly_chunk_size to prevent from crashing · 6ab2dc2e
  Jean Mainguy authored Oct 06, 2020
  
  6ab2dc2e
- Merge branch 'flexible_workflow' of... · 5086a804
  Jean Mainguy authored Oct 06, 2020
```
Merge branch 'flexible_workflow' of forgemia.inra.fr:seqoccin/axis3-metagenomics into flexible_workflow
```
  5086a804