diff --git a/Creation_fichier_fq_compatible_FROGS b/Creation_fichier_fq_compatible_FROGS index 66c3464caaff25facf8af001dbaf709275a39cb5..34cf12749e646bcb82ba2f82afe6f82e7f67e8f8 100644 --- a/Creation_fichier_fq_compatible_FROGS +++ b/Creation_fichier_fq_compatible_FROGS @@ -6,14 +6,14 @@ mkdir FROGS #pour 16S for i in *.fasta.gz; do a=$(basename $i .gz); - zcat $i | awk '{if($0~">"){print $0}else{print "CAGCMGCYGCNGTAANAC"$0"ACTYAAAKGAATTGRCGG"}}' > FROGS/$a; + zcat $i | awk 'BEGIN{a=1}{if($0~">"){print $1"_"a;a++}else{print "CAGCMGCYGCNGTAANAC"$0"ACTYAAAKGAATTGRCGG"}}' > FROGS/$a; done #pour 18S mkdir FROGS for i in *.fasta.gz; do a=$(basename $i .gz); - zcat $i | awk '{if($0~">"){print $0}else{print "CGATAACGAACGAGACCT"$0"ANTACCGATGAATGGNT"}}' > FROGS/$a; + zcat $i | awk 'BEGIN{a=1}{if($0~">"){print $1"_"a;a++}else{print "CGATAACGAACGAGACCT"$0"ANTACCGATGAATGGNT"}}' > FROGS/$a; done