Commit a7517942 authored by Safia Saci's avatar Safia Saci
Browse files

Update annotationBlocksCount.R

parent 1612de33
......@@ -12,9 +12,10 @@ opt <- parse_args(OptionParser(
description = "Count reads per windows from a .bam file. Save results as and .rds object."
))
# applicate annotationBlockscount to input bam files
results <- annotationBlocksCounts(
opt$input_bam,
readRDS(opt$windows)
)
saveRDS(results, file = opt$output_name)
\ No newline at end of file
saveRDS(results, file = opt$output_name)
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