Commit 7ccc5b23 authored by Safia Saci's avatar Safia Saci
Browse files

Update bayMethList_sarray.sh

parent b920ead9
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R1_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R2_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R3_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R4_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R5_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fasted_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R6_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fed_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R1_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fed_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R2_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fed_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R3_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fed_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R4_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11-_fed_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R5_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R1_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R2_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R3_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R4_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R5_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fasted_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R6_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R1_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R2_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R3_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R4_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R5_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/G11+_fed_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/controls.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R6_score.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R1_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R2_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R3_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R4_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R5_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fasted_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fasted_R6_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fed_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R1_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fed_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R2_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fed_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R3_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fed_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R4_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11-_fed_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_minus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11-_fed_R5_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R1_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R2_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R3_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R4_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R5_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fasted_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fasted_R6_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R1.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R1_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R2.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R2_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R3.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R3_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R4.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R4_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R5.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R5_sortie.bigwig
./bayMethList_GD.R -i /work2/genphyse/genepi/guillaume/rosepigs/annotationBlockCountRDS/G11+_fed_R6.rds -w /work2/genphyse/genepi/guillaume/rosepigs/windows_full_genome.RDS -c /work2/genphyse/genepi/guillaume/rosepigs/control_plus.rds -d /work2/genphyse/genepi/guillaume/rosepigs/cpgDens.RData -o G11+_fed_R6_sortie.bigwig
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