Commit 38eb6585 authored by Safia Saci's avatar Safia Saci
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parent 86e9b512
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R1.mLb.clN.sorted.bam > G11-_fasted_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R2.mLb.clN.sorted.bam > G11-_fasted_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R3.mLb.clN.sorted.bam > G11-_fasted_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R4.mLb.clN.sorted.bam > G11-_fasted_R4.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R5.mLb.clN.sorted.bam > G11-_fasted_R5.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fasted_R6.mLb.clN.sorted.bam > G11-_fasted_R6.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fed_R1.mLb.clN.sorted.bam > G11-_fed_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fed_R2.mLb.clN.sorted.bam > G11-_fed_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fed_R3.mLb.clN.sorted.bam > G11-_fed_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fed_R4.mLb.clN.sorted.bam > G11-_fed_R4.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11-_fed_R5.mLb.clN.sorted.bam > G11-_fed_R5.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R1.mLb.clN.sorted.bam > G11+_fasted_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R2.mLb.clN.sorted.bam > G11+_fasted_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R3.mLb.clN.sorted.bam > G11+_fasted_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R4.mLb.clN.sorted.bam > G11+_fasted_R4.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R5.mLb.clN.sorted.bam > G11+_fasted_R5.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fasted_R6.mLb.clN.sorted.bam > G11+_fasted_R6.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R1.mLb.clN.sorted.bam > G11+_fed_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R2.mLb.clN.sorted.bam > G11+_fed_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R3.mLb.clN.sorted.bam > G11+_fed_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R4.mLb.clN.sorted.bam > G11+_fed_R4.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R5.mLb.clN.sorted.bam > G11+_fed_R5.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/G11+_fed_R6.mLb.clN.sorted.bam > G11+_fed_R6.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-input_R1.mLb.clN.sorted.bam > Tem-input_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-input_R2.mLb.clN.sorted.bam > Tem-input_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-input_R3.mLb.clN.sorted.bam > Tem-input_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-input_R4.mLb.clN.sorted.bam > Tem-input_R4.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-methyl_R1.mLb.clN.sorted.bam > Tem-methyl_R1.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-methyl_R2.mLb.clN.sorted.bam > Tem-methyl_R2.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-methyl_R3.mLb.clN.sorted.bam > Tem-methyl_R3.bed
bedtools bamtobed -i /work2/genphyse/genepi/data/porc/medpseq/ROSEpigs_processed2/results/bwa/mergedLibrary/Tem-methyl_R4.mLb.clN.sorted.bam > Tem-methyl_R4.bed
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