- 28 Aug, 2018 4 commits
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Dannon Baker authored
Refactoring, drop BS4. It's faster, for sure, but this leaves us with fewer moving parts and this isn't a script anyone's going to run often. Hopefully.
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Dannon Baker authored
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Dannon Baker authored
Allow pages to read both encoded and unencoded ids out of the database. Always save unencoded version, with the additional benefit of using a simpler, smaller placeholder.
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Dannon Baker authored
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- 27 Aug, 2018 1 commit
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Marius van den Beek authored
[18.05] row ids that are all numeric become ints...
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- 26 Aug, 2018 2 commits
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mvdbeek authored
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Brad Langhorst authored
Since the "F" prefix is checked with substring, row_id must always be a string
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- 15 Aug, 2018 2 commits
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John Chilton authored
[18.05] Update UCSC genome-test server URLs
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John Chilton authored
[18.05] Fix Location of Plugin Static Content In Documentation for 18.05
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- 14 Aug, 2018 1 commit
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Matthew Spelchak authored
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- 10 Aug, 2018 3 commits
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Dannon Baker authored
Bump version; 'patch' since it should be the exact same, as much as anything over the net ever could be\?
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Dannon Baker authored
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Dannon authored
[18.05] Use object store to check for existence of extra_files_path
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- 09 Aug, 2018 1 commit
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mvdbeek authored
This should fix https://github.com/galaxyproject/galaxy/issues/6585
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- 08 Aug, 2018 1 commit
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John Chilton authored
[18.05] Client rebuild to include uploadbox value fix in release branch.
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- 07 Aug, 2018 6 commits
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Dannon Baker authored
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Dannon authored
[18.05] Fix upload file selector value resetting
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guerler authored
Fix
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Dannon authored
[18.05] Fix workflow run link for extracted workflows
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Dannon Baker authored
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Dannon authored
[18.01] Use subworkflow index when setting auto-label
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- 06 Aug, 2018 4 commits
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Marius van den Beek authored
[18.05] Fix dataset copy tags
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guerler authored
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mvdbeek authored
Previously this would reference the parent workflow index, while the get_data module would use the subworkflow index. This means defining workflows worked fine, but executing would fail when trying to find the output to replace. Using the subworkflow index here seems like the correct thing to do. Fixes https://github.com/galaxyproject/galaxy/issues/6560
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mvdbeek authored
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- 31 Jul, 2018 1 commit
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Dannon Baker authored
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- 30 Jul, 2018 1 commit
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Dannon authored
[18.05] Fix "filter empty" rule in Python rule handling framework.
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- 26 Jul, 2018 3 commits
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Björn Grüning authored
[18.01] Fix to_dict with io_details=True for tools with collection outputs.
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Dannon authored
[18.05] Allow invalid optional param values for tools profile versions < 18.09
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John Chilton authored
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- 25 Jul, 2018 1 commit
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John Chilton authored
Fixes #6537 and includes a test case.
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- 23 Jul, 2018 2 commits
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John Chilton authored
[18.05] Fix warning in CONVERTER_bam_to_bigwig_0 and CONVERTER_sam_to_bigwig_0
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Nicola Soranzo authored
Since v2.27.0 (see https://github.com/arq5x/bedtools2/commit/4d188435777cfbd6ada7394ee78fde37f07c9a75 ), `bedtools genomecov` emits this warning: ``` ***** *****WARNING: Genome (-g) files are ignored when BAM input is provided. ***** ``` if both `-ibam` and `-g` option are specified, which causes the converters to always fail. Also: - Add `detect_errors="aggressive"` to `<command/>` to prevent future warnings from creating other issues. - Fix input format in `CONVERTER_sam_to_bigwig_0`.
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- 17 Jul, 2018 2 commits
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Martin Cech authored
Merge pull request #6510 from nsoranzo/release_18.05_backport_29f8e29b0bf5d50c0b735aa707d2a61623cc805b [18.05] Fix infinite loop in uploads
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John Chilton authored
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- 13 Jul, 2018 2 commits
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Marius van den Beek authored
[18.05] backport ftp purge fix
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Nicola Soranzo authored
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- 12 Jul, 2018 1 commit
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takadonet authored
Added fix to ensure that original ftp files that have been uploaded are purged if set in galaxy.yml with flag ftp_upload_purge. Address issue #6492
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- 11 Jul, 2018 2 commits
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John Chilton authored
[18.05] Specify standard HTTPTransport for Sentry
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John Chilton authored
[18.05] Make sure that the workflow step has a proper state available
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