1. 28 Sep, 2018 7 commits
  2. 23 Apr, 2018 1 commit
  3. 21 Apr, 2018 1 commit
  4. 31 Jan, 2018 1 commit
  5. 29 Jan, 2018 2 commits
  6. 22 Jan, 2018 1 commit
  7. 01 Jan, 2018 1 commit
  8. 20 Dec, 2017 2 commits
  9. 08 Dec, 2017 1 commit
  10. 07 Dec, 2017 1 commit
  11. 06 Dec, 2017 1 commit
  12. 15 Nov, 2017 4 commits
  13. 14 Nov, 2017 1 commit
  14. 13 Nov, 2017 2 commits
  15. 11 Nov, 2017 2 commits
    • mvdbeek's avatar
      Specify TagAssociation class when copying a tag · 0207b018
      mvdbeek authored
      This probably fixes https://github.com/galaxyproject/galaxy/issues/4975.
      Otherwise if a collection is created from a HDA with a tag (i.e by splitting the dataset)
      a HistoryDatasetAssociationTag would be added to a collection of
      HistoryDatasetCollectionAssociationTags.
      0207b018
    • mvdbeek's avatar
      Tolerate IOError in tool and data table watcher · b6a0a1b0
      mvdbeek authored
      Without these changes the watcher thread may die when manually deleting loc files:
      ```
      Exception in thread Thread-7:
      Traceback (most recent call last):
        File "/usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", line 801, in __bootstrap_inner
          self.run()
        File "/Users/mvandenb/src/galaxy/.venv/lib/python2.7/site-packages/watchdog/observers/api.py", line 199, in run
          self.dispatch_events(self.event_queue, self.timeout)
        File "/Users/mvandenb/src/galaxy/.venv/lib/python2.7/site-packages/watchdog/observers/api.py", line 368, in dispatch_events
          handler.dispatch(event)
        File "/Users/mvandenb/src/galaxy/.venv/lib/python2.7/site-packages/watchdog/events.py", line 322, in dispatch
          self.on_any_event(event)
        File "/Users/mvandenb/src/galaxy/lib/galaxy/tools/toolbox/watcher.py", line 226, in on_any_event
          self._handle(event)
        File "/Users/mvandenb/src/galaxy/lib/galaxy/tools/toolbox/watcher.py", line 235, in _handle
          cur_hash = md5_hash_file(path)
        File "/Users/mvandenb/src/galaxy/lib/galaxy/util/hash_util.py", line 23, in md5_hash_file
          with open(path, 'rb') as afile:
      IOError: [Errno 2] No such file or directory: '/Users/mvandenb/src/galaxy/tool-data/toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/620d5603d1a8/sam_fa_indices.loc'
      ```
      Similar problems could occur when deleting tool xml files.
      b6a0a1b0
  16. 30 Oct, 2017 3 commits
  17. 27 Oct, 2017 1 commit
  18. 26 Oct, 2017 1 commit
  19. 25 Oct, 2017 7 commits