1. 26 Sep, 2018 1 commit
  2. 07 Sep, 2018 2 commits
  3. 08 Aug, 2018 4 commits
  4. 07 Aug, 2018 1 commit
  5. 06 Aug, 2018 2 commits
  6. 26 Jul, 2018 1 commit
  7. 25 Jul, 2018 1 commit
  8. 11 Jul, 2018 1 commit
  9. 09 Jul, 2018 1 commit
  10. 22 Jun, 2018 3 commits
  11. 19 Jun, 2018 2 commits
  12. 18 Jun, 2018 1 commit
  13. 17 Jun, 2018 1 commit
  14. 15 Jun, 2018 2 commits
  15. 14 Jun, 2018 2 commits
  16. 06 Jun, 2018 4 commits
  17. 04 Jun, 2018 3 commits
  18. 02 Jun, 2018 4 commits
    • Nicola Soranzo's avatar
      Use consistent preference order for config files · aaff4741
      Nicola Soranzo authored
      1) galaxy.yml
      2) galaxy.ini
      3) universe_wsgi.ini
      
      Also:
      - properly quote variables which may contain spaces
      - no need to pass the config file to `./scripts/manage_tool_dependencies.py`
      - simplify `scripts/maintenance.sh` by moving the `cd` up and reusing
        functions from `scripts/common_startup_functions.sh`
      aaff4741
    • Nicola Soranzo's avatar
      Look for config file inside galaxy.dependencies.optional() · c9daa60e
      Nicola Soranzo authored
      Also don't fail if no config file is found, just print a message on
      stderr.
      This allows the removal of the code to set `GALAXY_CONFIG_FILE` from
      `scripts/common_startup.sh` .
      c9daa60e
    • Nicola Soranzo's avatar
      Check for empty pid file when using --wait · 87719b9f
      Nicola Soranzo authored
      Fix this error message:
      
      ```
      Executing: python ./scripts/paster.py serve config/galaxy.ini  --daemon --server-name="main" --pid-file="main.pid" --log-file="main.log"
      Entering daemon mode
      ../run.sh: 96: [: Illegal number:
      .....
      ```
      87719b9f
    • Nicola Soranzo's avatar
      Use separate `pid_log_paster_args` variable · 0ea81071
      Nicola Soranzo authored
      to store --pid-file and --log-file options of `./scripts/paster.py` .
      
      https://github.com/galaxyproject/galaxy/pull/6239 fixed 3 bugs:
      
      - `GALAXY_RUN_ALL=1 ./run.sh` was reusing the same pid and log files for
        all Galaxy processes;
      - `./run.sh restart` was always using `paster.pid` and `paster.log` instead
        of the configured files
      - `./run.sh status` was always using `paster.pid`
      
      but also introduced a regression, i.e. the plain `./run.sh` started
      writing to the log file instead of the standard output (console).
      
      This fixes the regression by using a separate variable for these options
      instead of conflating them in `paster_args` or `server_args`.
      0ea81071
  19. 31 May, 2018 3 commits
  20. 29 May, 2018 1 commit