config: add a job_conf.xml

enabling to use the cli runner on the muse cluster.

.gitignore

@@ -64,13 +64,13 @@ tool_sheds_conf.xml
 integrated_tool_panel.xml
 openid_conf.xml
 shed_tool_data_table_conf.xml
-job_conf.xml
+#job_conf.xml
 data_manager_conf.xml
 shed_data_manager_conf.xml
 object_store_conf.xml
 job_metrics_conf.xml
 workflow_schedulers_conf.xml
-config/*
+#config/*
 config/plugins/interactive_environments/**/*.ini
 !config/plugins
 static/welcome.html.*

config/job_conf.xml

+<?xml version="1.0"?>
+<!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
+<job_conf>
+    <plugins>
+        <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
+	<plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" workers="4"/>
+    </plugins>
+    <destinations default="ssh_slurm">
+        <destination id="local" runner="local"/>
+        <destination id="ssh_slurm" runner="cli">
+            <param id="shell_plugin">SecureShell</param>
+            <param id="job_plugin">Slurm</param>
+            <param id="shell_username">chabrierp</param>
+            <param id="shell_hostname">muse-login.hpc-lr.univ-montp2.fr</param>
+            <param id="job_time">2:00:00</param>
+            <param id="job_ncpus">4</param>
+            <param id="job_partition">defq</param>
+        </destination>
+    </destinations>
+    <tools>
+	<tool id="uname" destination="ssh_slurm" />
+	<tool id="unameloc" destination="local" />
+	<tool id="runtask" destination="ssh_slurm" />
+	<tool id="runtaskloc" destination="local" />
+    </tools>
+</job_conf>