From fd4a185b30d9c2a235312b122d7fbdd3fd188f03 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Thu, 8 Jun 2017 22:51:16 +0200
Subject: [PATCH] accession label
---
src/core/proteinxtp.cpp | 5 ++++-
src/gui/protein_view/protein_detail_view.ui | 17 +----------------
src/gui/protein_view/proteinwindow.cpp | 5 +++++
3 files changed, 10 insertions(+), 17 deletions(-)
diff --git a/src/core/proteinxtp.cpp b/src/core/proteinxtp.cpp
index c5551184..947eb414 100644
--- a/src/core/proteinxtp.cpp
+++ b/src/core/proteinxtp.cpp
@@ -125,7 +125,7 @@ unsigned int ProteinXtp::countTrypticPeptidesForPAI() const {
void ProteinXtp::parseAccession2dbxref() {
qDebug() << "ProteinXtp::parseAccession2dbxref begin" ;
- QStringList access_list = getAccession().split("\\|");
+ QStringList access_list = getAccession().split("|");
// if (access.length == 1)
QRegExp atg("^[Aa][Tt][MmCc1-5][Gg]\\d{5}\\.?\\d?$");
QRegExp ncbi_gi("^[0-9]{5,8}$");
@@ -134,6 +134,7 @@ void ProteinXtp::parseAccession2dbxref() {
QRegExp ref ("^[NZ]P\\_[0-9]{5,8}$");
for (QString & accession :access_list) {
+ qDebug() << "ProteinXtp::parseAccession2dbxref accession " << accession;
if (atg.indexIn(accession, 0) != -1) {
QStringList temp = accession.split("\\.");
_dbxref_list.push_back(std::make_pair(ExternalDatabase::AGI_LocusCode, temp.at(0)));
@@ -143,10 +144,12 @@ void ProteinXtp::parseAccession2dbxref() {
}
if (swiss_prot.indexIn(accession, 0) != -1) {
+ qDebug() << "ProteinXtp::parseAccession2dbxref accession SwissProt " << accession;
_dbxref_list.push_back(std::make_pair(ExternalDatabase::SwissProt, accession));
}
if (trembl.indexIn(accession, 0) != -1) {
+ qDebug() << "ProteinXtp::parseAccession2dbxref accession TrEMBL " << accession;
_dbxref_list.push_back(std::make_pair(ExternalDatabase::TrEMBL, accession));
}
if (ref.indexIn(accession, 0) != -1) {
diff --git a/src/gui/protein_view/protein_detail_view.ui b/src/gui/protein_view/protein_detail_view.ui
index 4233a77c..9281f5c0 100644
--- a/src/gui/protein_view/protein_detail_view.ui
+++ b/src/gui/protein_view/protein_detail_view.ui
@@ -39,27 +39,12 @@
</item>
<item>
<widget class="QLabel" name="accession_label">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Preferred" vsizetype="Minimum">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="maximumSize">
- <size>
- <width>16777215</width>
- <height>167</height>
- </size>
- </property>
<property name="text">
<string>TextLabel</string>
</property>
<property name="wordWrap">
<bool>true</bool>
</property>
- <property name="textInteractionFlags">
- <set>Qt::LinksAccessibleByMouse|Qt::TextSelectableByKeyboard|Qt::TextSelectableByMouse</set>
- </property>
</widget>
</item>
<item>
@@ -172,7 +157,7 @@
<x>0</x>
<y>0</y>
<width>609</width>
- <height>46</height>
+ <height>25</height>
</rect>
</property>
</widget>
diff --git a/src/gui/protein_view/proteinwindow.cpp b/src/gui/protein_view/proteinwindow.cpp
index faafebfb..cb8698c2 100644
--- a/src/gui/protein_view/proteinwindow.cpp
+++ b/src/gui/protein_view/proteinwindow.cpp
@@ -76,6 +76,11 @@ void ProteinWindow::updateDisplay() {
ui->decoy_checkbox->setCheckState(Qt::Unchecked);
if (_p_protein_match->getProteinXtpSp().get()->isDecoy()) ui->decoy_checkbox->setCheckState(Qt::Checked);
ui->accession_label->setText(_p_protein_match->getProteinXtpSp().get()->getAccession());
+ for (std::pair<ExternalDatabase, QString> dbxref:_p_protein_match->getProteinXtpSp().get()->getDbxrefList()) {
+ QString accession = ui->accession_label->text().replace(dbxref.second, QString("<a href=\"\" style=\"color:%2;\">%1</a>").arg(dbxref.second).arg("blue"));
+ ui->accession_label->setText(accession);
+ qDebug() << "ProteinWindow::updateDisplay " << accession;
+ }
ui->description_label->setText(_p_protein_match->getProteinXtpSp().get()->getDescription());
ui->sequenceTextEdit->setText(_p_protein_match->getHtmlSequence());
ui->coverage_label->setText(QString("%1 %").arg(_p_protein_match->getCoverage()*100));
--
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