From e618fd14ad29db8a782cd9048c7eaf1dca56c753 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon, 8 Jan 2018 22:16:10 +0100
Subject: [PATCH] look for msrun and scan number in protein list
---
src/CMakeLists.txt | 4 +-
src/gui/protein_list_view/protein_view.ui | 40 ++++++++++++++++++-
.../protein_list_view/proteinlistwindow.cpp | 8 ++++
src/gui/protein_list_view/proteinlistwindow.h | 2 +
.../proteintableproxymodel.cpp | 30 ++++++++++++++
.../proteintableproxymodel.h | 1 +
6 files changed, 82 insertions(+), 3 deletions(-)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 8df429b3..74c5329c 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -28,8 +28,8 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5
#sudo apt-get install libpappsomspp-dev
#FIND_PACKAGE( Pappsomspp REQUIRED )
-#SET (PAPPSOMSPP_DIR "/home/olivier/eclipse/git/pappsomspp")
- SET (PAPPSOMSPP_DIR "/home/langella/developpement/git/pappsomspp")
+SET (PAPPSOMSPP_DIR "/home/olivier/eclipse/git/pappsomspp")
+# SET (PAPPSOMSPP_DIR "/home/langella/developpement/git/pappsomspp")
SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
SET (PAPPSOMSPP_QT5_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt5.so")
SET (PAPPSOMSPP_WIDGET_QT5_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/pappsomspp/widget/libpappsomspp-widget-qt5.so")
diff --git a/src/gui/protein_list_view/protein_view.ui b/src/gui/protein_list_view/protein_view.ui
index 7934ff6a..5541225b 100644
--- a/src/gui/protein_list_view/protein_view.ui
+++ b/src/gui/protein_list_view/protein_view.ui
@@ -110,7 +110,11 @@
<widget class="QLineEdit" name="msrun_auto_completion"/>
</item>
<item>
- <widget class="QSpinBox" name="scan_number_edit"/>
+ <widget class="QSpinBox" name="scan_number_edit">
+ <property name="maximum">
+ <number>9999999</number>
+ </property>
+ </widget>
</item>
</layout>
</item>
@@ -210,6 +214,38 @@
</hint>
</hints>
</connection>
+ <connection>
+ <sender>msrun_auto_completion</sender>
+ <signal>textChanged(QString)</signal>
+ <receiver>ProteinView</receiver>
+ <slot>doMsrunFileSearch(QString)</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>574</x>
+ <y>360</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>860</x>
+ <y>501</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>scan_number_edit</sender>
+ <signal>valueChanged(int)</signal>
+ <receiver>ProteinView</receiver>
+ <slot>doScanNumberSearch(int)</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>782</x>
+ <y>346</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>1091</x>
+ <y>324</y>
+ </hint>
+ </hints>
+ </connection>
</connections>
<slots>
<slot>doNotValidHide(bool)</slot>
@@ -217,5 +253,7 @@
<slot>doNotGroupedHide(bool)</slot>
<slot>onProteinSearchEdit(QString)</slot>
<slot>doSearchOn(QString)</slot>
+ <slot>doMsrunFileSearch(QString)</slot>
+ <slot>doScanNumberSearch(int)</slot>
</slots>
</ui>
diff --git a/src/gui/protein_list_view/proteinlistwindow.cpp b/src/gui/protein_list_view/proteinlistwindow.cpp
index 4acadde0..e3e84d72 100644
--- a/src/gui/protein_list_view/proteinlistwindow.cpp
+++ b/src/gui/protein_list_view/proteinlistwindow.cpp
@@ -241,6 +241,14 @@ void ProteinListWindow::doSearchOn(QString search_on) {
emit proteinDataChanged();
}
+void ProteinListWindow::doMsrunFileSearch(QString msr_run_file_search) {
+ //_p_proxy_model->setMsrunFileSearch(msr_run_file_search);
+ emit proteinDataChanged();
+}
+
+void ProteinListWindow::doScanNumberSearch(int scan_num) {
+ emit proteinDataChanged();
+}
void ProteinListWindow::onProteinSearchEdit(QString protein_search_string) {
qDebug() << "ProteinTableProxyModel::onProteinSearchEdit begin " << protein_search_string;
diff --git a/src/gui/protein_list_view/proteinlistwindow.h b/src/gui/protein_list_view/proteinlistwindow.h
index 0b30860f..a5966bca 100644
--- a/src/gui/protein_list_view/proteinlistwindow.h
+++ b/src/gui/protein_list_view/proteinlistwindow.h
@@ -85,6 +85,8 @@ protected slots:
void doNotValidHide(bool hide);
void doNotCheckedHide(bool hide);
void doNotGroupedHide(bool hide);
+ void doMsrunFileSearch(QString msr_run_file_search);
+ void doScanNumberSearch(int scan_num);
void doProxyLayoutChanged();
void showContextMenu(const QPoint &);
void updateStatusBar();
diff --git a/src/gui/protein_list_view/proteintableproxymodel.cpp b/src/gui/protein_list_view/proteintableproxymodel.cpp
index e133174c..55f25919 100644
--- a/src/gui/protein_list_view/proteintableproxymodel.cpp
+++ b/src/gui/protein_list_view/proteintableproxymodel.cpp
@@ -23,6 +23,7 @@
#include <QDebug>
#include <pappsomspp/pappsoexception.h>
+#include "ui_protein_view.h"
#include "proteintableproxymodel.h"
#include "proteintablemodel.h"
#include "proteinlistwindow.h"
@@ -48,6 +49,32 @@ bool ProteinTableProxyModel::filterAcceptsRow(int source_row,
ProteinMatch * protein_match = _protein_table_model_p->getIdentificationGroup()->getProteinMatchList().at(source_row);
//qDebug() << "ProteinTableProxyModel::filterAcceptsRow protein_match " << source_row;
+
+ if (_search_on == "msrun/scan") {
+ unsigned int scan_num = this->_p_protein_list_window->ui->scan_number_edit->value();
+ QString file_search_string = this->_p_protein_list_window->ui->msrun_auto_completion->text().toLower();
+ qDebug() << "ProteinTableProxyModel::filterAcceptsRow msrun/scan " << file_search_string << " " << scan_num;
+ for (const PeptideMatch & p_peptide_match: protein_match->getPeptideMatchList()) {
+ bool scan_ok = true;
+ if (scan_num > 0) {
+ scan_ok = false;
+ if (p_peptide_match.getPeptideEvidence()->getScan() == scan_num) {
+ scan_ok = true;
+ }
+ }
+ bool msrun_ok = true;
+ if (!file_search_string.isEmpty()) {
+ msrun_ok = false;
+ if (p_peptide_match.getPeptideEvidence()->getMsRunP()->getFilename().toLower().contains(file_search_string)) {
+ msrun_ok = true;
+ }
+ }
+ if (msrun_ok && scan_ok ) {
+ return true;
+ }
+ }
+ return false;
+ }
if (!_protein_search_string.isEmpty()) {
if (_search_on == "accession") {
if (!protein_match->getProteinXtpSp().get()->getAccession().contains(_protein_search_string)) {
@@ -204,6 +231,9 @@ void ProteinTableProxyModel::hideNotGrouped(bool hide) {
void ProteinTableProxyModel::setSearchOn(QString search_on) {
_search_on = search_on;
}
+
+void ProteinTableProxyModel::setMsrunFileSearch(QString msrun_file_search) {
+}
void ProteinTableProxyModel::setProteinSearchString(QString protein_search_string) {
_protein_search_string = protein_search_string;
}
diff --git a/src/gui/protein_list_view/proteintableproxymodel.h b/src/gui/protein_list_view/proteintableproxymodel.h
index 082c2d06..a71cf0a2 100644
--- a/src/gui/protein_list_view/proteintableproxymodel.h
+++ b/src/gui/protein_list_view/proteintableproxymodel.h
@@ -50,6 +50,7 @@ public:
void hideNotChecked(bool hide);
void hideNotGrouped(bool hide);
void setProteinSearchString(QString protein_search_string);
+ void setMsrunFileSearch(QString msrun_file_search);
void setSearchOn(QString search_on);
void setProteinListColumnDisplay(ProteinListColumn column, bool toggled);
bool getProteinListColumnDisplay(ProteinListColumn column) const;
--
GitLab