From e5d12a9ba1d8bb5a3460c639d2268dd5824d2b50 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu, 14 Feb 2019 21:58:48 +0100
Subject: [PATCH] option to use buffered xic extractor
---
src/core/msrun.cpp | 19 ++++++++++++++++---
1 file changed, 16 insertions(+), 3 deletions(-)
diff --git a/src/core/msrun.cpp b/src/core/msrun.cpp
index 1c65d870..6093a130 100644
--- a/src/core/msrun.cpp
+++ b/src/core/msrun.cpp
@@ -230,11 +230,24 @@ MsRun::getMsRunXicExtractorSp()
if(this->findMsRunFile())
{
- pappso::MsRunXicExtractorFactory::getInstance().setTmpDir("/tmp");
+ pappso::MsRunXicExtractorFactory::getInstance().setTmpDir(
+ QDir::tempPath());
+
+ QSettings settings;
+ QString xic_extraction_method =
+ settings.value("global/xic_extractor", "pwiz").toString();
+ if(xic_extraction_method == "pwiz")
+ {
+ _xic_extractor_sp = pappso::MsRunXicExtractorFactory::getInstance()
+ .buildMsRunXicExtractorPwizSp(*this);
+ }
+ else
+ {
+ _xic_extractor_sp = pappso::MsRunXicExtractorFactory::getInstance()
+ .buildMsRunXicExtractorDiskBufferSp(*this);
+ }
//_xic_extractor_sp = pappso::MsRunXicExtractorFactory::getInstance()
// .buildMsRunXicExtractorDiskBufferSp(*this);
- _xic_extractor_sp = pappso::MsRunXicExtractorFactory::getInstance()
- .buildMsRunXicExtractorPwizSp(*this);
}
return _xic_extractor_sp;
}
--
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