diff --git a/src/output/masschroqml.cpp b/src/output/masschroqml.cpp index 92fbc262a753c4262842547c8a5294312ed7ea4b..a5a4e3f50880da8e87ef02e925a9c59bb99515aa 100644 --- a/src/output/masschroqml.cpp +++ b/src/output/masschroqml.cpp @@ -33,6 +33,7 @@ #include <pappsomspp/grouping/grpprotein.h> #include <pappsomspp/amino_acid/Aa.h> #include <QStringList> +#include <QSettings> struct McqObserved { @@ -79,6 +80,12 @@ MassChroQml::MassChroQml(const QString & out_filename) _output_stream->setAutoFormatting(true); _output_stream->writeStartDocument("1.0"); + QSettings settings; + _detect_zivy.setSmoothingHalfEdgeWindows(settings.value("xic/zivy_smoothing", "1").toInt()); + _detect_zivy.setMinMaxHalfEdgeWindows(settings.value("xic/zivy_minmax_half_window", "3").toInt()); + _detect_zivy.setMaxMinHalfEdgeWindows(settings.value("xic/zivy_maxmin_half_window", "2").toInt()); + _detect_zivy.setDetectionThresholdOnMinmax(settings.value("xic/zivy_minmax_threshold", "5000").toDouble()); + _detect_zivy.setDetectionThresholdOnMaxmin(settings.value("xic/zivy_maxmin_threshold", "3000").toDouble()); } @@ -264,23 +271,23 @@ void MassChroQml::writeQuantificationMethods() { _output_stream->writeStartElement("detection_zivy"); //<mean_filter_half_edge>1</mean_filter_half_edge> _output_stream->writeStartElement("mean_filter_half_edge"); - _output_stream->writeCharacters("1"); + _output_stream->writeCharacters(QString("%1").arg(_detect_zivy.getSmoothingHalfEdgeWindows())); _output_stream->writeEndElement(); //<minmax_half_edge>3</minmax_half_edge> _output_stream->writeStartElement("minmax_half_edge"); - _output_stream->writeCharacters("3"); + _output_stream->writeCharacters(QString("%1").arg(_detect_zivy.getMinMaxHalfEdgeWindows())); _output_stream->writeEndElement(); //<maxmin_half_edge>2</maxmin_half_edge> _output_stream->writeStartElement("maxmin_half_edge"); - _output_stream->writeCharacters("2"); + _output_stream->writeCharacters(QString("%1").arg(_detect_zivy.getMaxMinHalfEdgeWindows())); _output_stream->writeEndElement(); //<detection_threshold_on_max>5000</detection_threshold_on_max> _output_stream->writeStartElement("detection_threshold_on_max"); - _output_stream->writeCharacters("5000"); + _output_stream->writeCharacters(QString("%1").arg(_detect_zivy.getDetectionThresholdOnMinmax())); _output_stream->writeEndElement(); //<detection_threshold_on_min>3000</detection_threshold_on_min> _output_stream->writeStartElement("detection_threshold_on_min"); - _output_stream->writeCharacters("3000"); + _output_stream->writeCharacters(QString("%1").arg(_detect_zivy.getDetectionThresholdOnMaxmin())); _output_stream->writeEndElement(); //</detection_zivy> _output_stream->writeEndElement(); diff --git a/src/output/masschroqml.h b/src/output/masschroqml.h index 8eeeb559ff93118ce9dc7587f0c4363d4f662320..04031f2e9d1e128e6cbcd4c8bbae52cd2026334e 100644 --- a/src/output/masschroqml.h +++ b/src/output/masschroqml.h @@ -33,6 +33,7 @@ #include <QXmlStreamWriter> #include <QFile> #include <QString> +#include <pappsomspp/xic/detection/xicdetectionzivy.h> #include "../core/project.h" #include "../grouping/groupinggroup.h" @@ -61,6 +62,7 @@ private : QXmlStreamWriter * _output_stream; ProjectSp _sp_project; IdentificationGroup * _p_identification_group; + pappso::XicDetectionZivy _detect_zivy; }; #endif // MASSCHROQML_H