From e3d6a1a9ba842865c1dd7990cafb2a3e15ed0b3f Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Fri, 31 Mar 2017 11:04:45 +0200
Subject: [PATCH] display coverage, protein mw and evalue
---
src/CMakeLists.txt | 4 +-
src/gui/protein_view/protein_detail_view.ui | 47 +++++++++++++++++++++
src/gui/protein_view/proteinwindow.cpp | 4 ++
3 files changed, 53 insertions(+), 2 deletions(-)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 617e2004..46172223 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -29,8 +29,8 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5
#sudo apt-get install libpappsomspp-dev
#FIND_PACKAGE( Pappsomspp REQUIRED )
- SET (PAPPSOMSPP_DIR "/home/olivier/eclipse/git/pappsomspp")
-# SET (PAPPSOMSPP_DIR "/home/langella/developpement/git/pappsomspp")
+# SET (PAPPSOMSPP_DIR "/home/olivier/eclipse/git/pappsomspp")
+ SET (PAPPSOMSPP_DIR "/home/langella/developpement/git/pappsomspp")
SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
diff --git a/src/gui/protein_view/protein_detail_view.ui b/src/gui/protein_view/protein_detail_view.ui
index addfcf9f..cd5a93d4 100644
--- a/src/gui/protein_view/protein_detail_view.ui
+++ b/src/gui/protein_view/protein_detail_view.ui
@@ -46,6 +46,53 @@
</property>
</widget>
</item>
+
+ <item>
+ <layout class="QFormLayout" name="formLayout">
+ <item row="0" column="0">
+ <widget class="QLabel" name="label">
+ <property name="text">
+ <string>coverage</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLabel" name="coverage_label">
+ <property name="text">
+ <string>0%</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_2">
+ <property name="text">
+ <string>MW</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLabel" name="mw_label">
+ <property name="text">
+ <string>1Da</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="0">
+ <widget class="QLabel" name="label_3">
+ <property name="text">
+ <string>Evalue</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="1">
+ <widget class="QLabel" name="evalue_label">
+ <property name="text">
+ <string>1</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
</layout>
</item>
</layout>
diff --git a/src/gui/protein_view/proteinwindow.cpp b/src/gui/protein_view/proteinwindow.cpp
index 8ba96d76..a90a6c5d 100644
--- a/src/gui/protein_view/proteinwindow.cpp
+++ b/src/gui/protein_view/proteinwindow.cpp
@@ -56,4 +56,8 @@ void ProteinWindow::setProteinMatch(ProteinMatch * p_protein_match) {
ui->descriptionLabel->setText(p_protein_match->getProteinXtpSp().get()->getAccession());
//ui->sequenceLabel->setText(p_protein_match->getProteinXtpSp().get()->getSequence());
ui->sequenceTextEdit->setText(p_protein_match->getHtmlSequence());
+ ui->coverage_label->setText(QString("%1 %").arg(p_protein_match->getCoverage()*100));
+ pappso::Peptide peptide(p_protein_match->getProteinXtpSp().get()->getSequence());
+ ui->mw_label->setText(QString("%1 kDa").arg(peptide.getMass()/1000));
+ ui->evalue_label->setText(QString("%1 (log10: %2)").arg(p_protein_match->getEvalue()).arg(log10(p_protein_match->getEvalue())));
}
--
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