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Commit c1cb2a22 authored by Renne Thomas's avatar Renne Thomas
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Change histo plot in XicBox

parent 7e27b5b9
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src/gui/xic_view/xic_box/xic_box.ui
View file @ c1cb2a22
......@@ -88,7 +88,8 @@
<string>new XIC</string>
</property>
<property name="icon">
<iconset theme="tab-new"/>
<iconset theme="tab-new">
<normaloff>.</normaloff>.</iconset>
</property>
</widget>
</item>
......@@ -176,7 +177,8 @@
<string/>
</property>
<property name="icon">
<iconset theme="window-close"/>
<iconset theme="window-close">
<normaloff>.</normaloff>.</iconset>
</property>
<property name="iconSize">
<size>
......@@ -194,7 +196,7 @@
</item>
<item>
<widget class="QWidget" name="widget_2" native="true">
<layout class="QHBoxLayout" name="horizontalLayout">
<layout class="QHBoxLayout" name="horizontalLayout" stretch="4,1">
<property name="spacing">
<number>0</number>
</property>
......
src/gui/xic_view/xic_box/xicbox.cpp
View file @ c1cb2a22
......@@ -513,7 +513,8 @@ XicBox::drawObservedAreaBars(
}
// m_observedRatioBars->setPen(QPen(QColor("red")));
m_observedAreaBars->setPen(QPen(QColor("yellow")));
m_observedAreaBars->setPen(QColor(180, 15, 32, 200));
m_observedAreaBars->setBrush(QColor(180, 15, 32, 200));
//_graph_peak_surface_list.back()->setScatterStyle(QCPScatterStyle::ssDot);
// observed_intensity->setBrush(QBrush(QColor(170, 255, 0, 0)));
......@@ -536,11 +537,27 @@ XicBox::drawObservedAreaBars(
if(ticks.size() > 0)
{
for(double &tick : ticks)
{
tick += 0.1;
}
m_observedAreaBars->setData(ticks, observed_intensity_data);
m_observedAreaBars->setWidth(0.6);
// QVector<QString> labels;
// for(double tick : ticks)
// {
// labels.push_back(QString::number(tick));
// }
// QSharedPointer<QCPAxisTickerText> textTicker(new
// QCPAxisTickerText); textTicker->addTicks(ticks, labels);
// ui->histo_widget->yAxis->setTicker(textTicker);
// m_observedRatioBars->setData(ticks, observed_ratio_data);
ui->histo_widget->yAxis2->setVisible(true);
ui->histo_widget->yAxis2->setRange(0, sum);
ui->histo_widget->yAxis2->setLabel("observed intensity");
ui->histo_widget->yAxis2->setLabelPadding(0);
ui->histo_widget->replot();
}
qDebug();
......@@ -578,6 +595,8 @@ XicBox::setIsotopeMassList(
}
m_theoreticalRatioBars->setName("th. ratio");
ui->histo_widget->xAxis->setLabel("isotopes");
m_theoreticalRatioBars->setPen(QColor(59, 154, 178));
m_theoreticalRatioBars->setBrush(QColor(59, 154, 178));
// ui->histo_widget->yAxis->setLabel("th. ratio");
QVector<double> theoretical_ratio_data;
......@@ -605,14 +624,15 @@ XicBox::setIsotopeMassList(
isotope_name.append(QString(" (%1%)").arg((
int)(xic_isotope.peptide_natural_isotope_sp.get()->getIntensityRatio() *
100)));
labels << isotope_name;
labels << QString::number(
xic_isotope.peptide_natural_isotope_sp.get()->getIsotopeNumber());
ticks << i;
i++;
}
// QSharedPointer<QCPAxisTickerText> textTicker(new QCPAxisTickerText);
// textTicker->addTicks(ticks, labels);
// ui->histo_widget->xAxis->setTicker(textTicker);
ui->histo_widget->xAxis->setTickLabelRotation(60);
QSharedPointer<QCPAxisTickerText> textTicker(new QCPAxisTickerText);
textTicker->addTicks(ticks, labels);
ui->histo_widget->xAxis->setTicker(textTicker);
ui->histo_widget->xAxis->setTickLabelRotation(0);
// ui->histo_widget->xAxis->setSubTicks(false);
// ui->histo_widget->xAxis->setTickLength(0, 4);
// ui->histo_widget->xAxis->setRange(0, 8);
......@@ -622,12 +642,18 @@ XicBox::setIsotopeMassList(
ui->histo_widget->xAxis->setTickStep(1);
*/
for(double &tick : ticks)
{
tick -= 0.1;
}
m_theoreticalRatioBars->setData(ticks, theoretical_ratio_data);
m_theoreticalRatioBars->setWidth(0.6);
ui->histo_widget->yAxis->setRange(0, sum);
ui->histo_widget->xAxis->setRange(-0.8, _natural_isotope_list.size());
ui->histo_widget->yAxis->setLabel("intensity ratio");
ui->histo_widget->yAxis->setLabelPadding(0);
ui->histo_widget->xAxis->setRange(-0.5, _natural_isotope_list.size() - 0.5);
ui->histo_widget->replot();
}
......
src/gui/xic_view/xic_window.ui
View file @ c1cb2a22
......@@ -69,6 +69,39 @@
</attribute>
</widget>
</item>
<item>
<widget class="Line" name="line">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
</widget>
</item>
<item>
<widget class="QToolButton" name="toolButton">
<property name="toolTip">
<string>Lock X axis through XICs</string>
</property>
<property name="text">
<string>...</string>
</property>
<property name="icon">
<iconset resource="../../xtpcpp.qrc">
<normaloff>:/icons/resources/icons/apache/firefox/unlock_icon.svg</normaloff>:/icons/resources/icons/apache/firefox/unlock_icon.svg</iconset>
</property>
<property name="iconSize">
<size>
<width>24</width>
<height>24</height>
</size>
</property>
<property name="shortcut">
<string/>
</property>
<property name="autoRaise">
<bool>true</bool>
</property>
</widget>
</item>
<item>
<spacer name="horizontalSpacer_2">
<property name="orientation">
......@@ -88,7 +121,7 @@
<string>...</string>
</property>
<property name="icon">
<iconset theme="spreadsheet">
<iconset theme="x-office-spreadsheet">
<normaloff>.</normaloff>.</iconset>
</property>
<property name="iconSize">
......@@ -252,6 +285,22 @@
</hint>
</hints>
</connection>
<connection>
<sender>toolButton</sender>
<signal>clicked()</signal>
<receiver>XicWindow</receiver>
<slot>doChangeLockXaxisRule()</slot>
<hints>
<hint type="sourcelabel">
<x>358</x>
<y>45</y>
</hint>
<hint type="destinationlabel">
<x>407</x>
<y>660</y>
</hint>
</hints>
</connection>
</connections>
<slots>
<slot>xicPrecisionChanged(pappso::PrecisionPtr)</slot>
......@@ -259,6 +308,7 @@
<slot>doEditZivyParams()</slot>
<slot>doXicExtractionMethodChanged(pappso::XicExtractMethod)</slot>
<slot>doExportXicToCsv()</slot>
<slot>doChangeLockXaxisRule()</slot>
</slots>
<buttongroups>
<buttongroup name="rt_unit_buttongroup"/>
......
src/gui/xic_view/xicwindow.cpp
View file @ c1cb2a22
......@@ -213,3 +213,18 @@ XicWindow::doExportXicToCsv()
}
emit operateXicAreaToCsv(filename, xic_boxs);
}
void XicWindow::doChangeLockXaxisRule()
{
if(m_lockXaxis)
{
ui->toolButton->setIcon(QIcon(":/icons/resources/icons/apache/firefox/unlock_icon.svg"));
m_lockXaxis = false;
}
else
{
ui->toolButton->setIcon(QIcon(":/icons/resources/icons/apache/firefox/lock_icon.svg"));
m_lockXaxis = true;
}
}
src/gui/xic_view/xicwindow.h
View file @ c1cb2a22
......@@ -75,7 +75,8 @@ class XicWindow : public QMainWindow
void doAcceptedZivyDialog();
void doXicExtractionMethodChanged(pappso::XicExtractMethod xic_method);
void doExportXicToCsv();
void doChangeLockXaxisRule();
signals:
void reExtractXicNeeded();
void rtUnitChangeNeeded();
......@@ -92,7 +93,7 @@ class XicWindow : public QMainWindow
private:
ProjectWindow *_project_window;
Ui::XicWindow *ui;
bool m_lockXaxis = false;
std::shared_ptr<pappso::TraceDetectionInterface> msp_detect_zivy;
......
src/resources/icons/apache/firefox/lock_icon.svg 0 → 100644
View file @ c1cb2a22
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" focusable="false" width="1em" height="1em" style="-ms-transform: rotate(360deg); -webkit-transform: rotate(360deg); transform: rotate(360deg);" preserveAspectRatio="xMidYMid meet" viewBox="0 0 512 512"><path fill="#B1B4B5" d="M376.749 349.097c-13.531 0-24.5-10.969-24.5-24.5V181.932c0-48.083-39.119-87.203-87.203-87.203c-48.083 0-87.203 39.119-87.203 87.203v82.977c0 13.531-10.969 24.5-24.5 24.5s-24.5-10.969-24.5-24.5v-82.977c0-75.103 61.1-136.203 136.203-136.203s136.203 61.1 136.203 136.203v142.665c0 13.531-10.969 24.5-24.5 24.5z"/><path fill="#FFB636" d="M414.115 497.459H115.977c-27.835 0-50.4-22.565-50.4-50.4V274.691c0-27.835 22.565-50.4 50.4-50.4h298.138c27.835 0 50.4 22.565 50.4 50.4v172.367c0 27.836-22.565 50.401-50.4 50.401z"/><path fill="#FFD469" d="M109.311 456.841h-2.525c-7.953 0-14.4-6.447-14.4-14.4V279.309c0-7.953 6.447-14.4 14.4-14.4h2.525c7.953 0 14.4 6.447 14.4 14.4v163.132c0 7.953-6.447 14.4-14.4 14.4z"/><rect x="0" y="0" width="512" height="512" fill="rgba(0, 0, 0, 0)" /></svg>
src/resources/icons/apache/firefox/unlock_icon.svg 0 → 100644
View file @ c1cb2a22
<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" aria-hidden="true" focusable="false" width="1em" height="1em" style="-ms-transform: rotate(360deg); -webkit-transform: rotate(360deg); transform: rotate(360deg);" preserveAspectRatio="xMidYMid meet" viewBox="0 0 512 512"><path fill="#B1B4B5" d="M376.749 304.47c-13.531 0-24.5-10.969-24.5-24.5V137.305c0-48.084-39.119-87.203-87.203-87.203c-48.083 0-87.203 39.119-87.203 87.203c0 13.531-10.969 24.5-24.5 24.5s-24.5-10.969-24.5-24.5c0-75.103 61.1-136.203 136.203-136.203s136.203 61.101 136.203 136.203V279.97c0 13.531-10.969 24.5-24.5 24.5z"/><path fill="#FFB636" d="M414.115 507.459H115.977c-27.835 0-50.4-22.565-50.4-50.4V284.691c0-27.835 22.565-50.4 50.4-50.4h298.138c27.835 0 50.4 22.565 50.4 50.4v172.367c0 27.836-22.565 50.401-50.4 50.401z"/><path fill="#FFD469" d="M109.311 466.841h-2.525c-7.953 0-14.4-6.447-14.4-14.4V289.309c0-7.953 6.447-14.4 14.4-14.4h2.525c7.953 0 14.4 6.447 14.4 14.4v163.132c0 7.953-6.447 14.4-14.4 14.4z"/><rect x="0" y="0" width="512" height="512" fill="rgba(0, 0, 0, 0)" /></svg>
src/xtpcpp.qrc
View file @ c1cb2a22
......@@ -109,6 +109,8 @@
<!-- following icons created by mozilla https://github.com/mozilla/fxemoji -->
<file>resources/icons/apache/firefox/folder_icon.svg</file>
<file>resources/icons/apache/firefox/check_icon.svg</file>
<file>resources/icons/apache/firefox/lock_icon.svg</file>
<file>resources/icons/apache/firefox/unlock_icon.svg</file>
</qresource>
<qresource prefix="/labeling">
<file>resources/catalog_label.xml</file>
......
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