From a2e3d68f4c4ed6c59e9f604d12d218c1d405b6b5 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Wed, 7 Mar 2018 17:10:57 +0100
Subject: [PATCH] apply evalue threshold on mascot files
---
.../identification_sources/identificationmascotdatfile.cpp | 3 ++-
src/core/identification_sources/identificationmascotdatfile.h | 2 +-
src/input/mascot/mascotdatparser.cpp | 4 ++--
3 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/src/core/identification_sources/identificationmascotdatfile.cpp b/src/core/identification_sources/identificationmascotdatfile.cpp
index dff8e3b8..459288fc 100644
--- a/src/core/identification_sources/identificationmascotdatfile.cpp
+++ b/src/core/identification_sources/identificationmascotdatfile.cpp
@@ -99,8 +99,9 @@ void IdentificationMascotDatFile::parseTo(Project* p_project) {
qDebug() << "IdentificationMascotDatFile::parseTo end";
}
-
+/*
const bool IdentificationMascotDatFile::isValid(const PeptideEvidence * p_peptide_evidence, const AutomaticFilterParameters & automatic_filter_parameters) const {
return true;
}
+*/
diff --git a/src/core/identification_sources/identificationmascotdatfile.h b/src/core/identification_sources/identificationmascotdatfile.h
index 819124e8..4c6a8d25 100644
--- a/src/core/identification_sources/identificationmascotdatfile.h
+++ b/src/core/identification_sources/identificationmascotdatfile.h
@@ -44,7 +44,7 @@ public:
virtual pappso::SpectrumSp getSpectrumSp(unsigned int scan_number) const override;
virtual void parseTo(Project* p_project) override;
- virtual const bool isValid(const PeptideEvidence * p_peptide_evidence, const AutomaticFilterParameters & automatic_filter_parameters) const override;
+ //virtual const bool isValid(const PeptideEvidence * p_peptide_evidence, const AutomaticFilterParameters & automatic_filter_parameters) const override;
private:
const QFileInfo _mascot_dat_file;
diff --git a/src/input/mascot/mascotdatparser.cpp b/src/input/mascot/mascotdatparser.cpp
index 319a0931..962c36c5 100644
--- a/src/input/mascot/mascotdatparser.cpp
+++ b/src/input/mascot/mascotdatparser.cpp
@@ -371,7 +371,7 @@ void MascotDatParser::parseSummaryLine(const QString & summary_line) {
void MascotDatParser::saveAndClearPeptide() {
- qDebug() << "MascotDatParser::saveAndClearPeptide begin";
+ //qDebug() << "MascotDatParser::saveAndClearPeptide begin";
if (_current_peptide.query_index > 0) {
// save
if (_is_decoy_section) {
@@ -387,7 +387,7 @@ void MascotDatParser::saveAndClearPeptide() {
_current_peptide.fasta_file_list.clear();
_current_peptide.query_index = 0;
_current_peptide.subst = "";
- qDebug() << "MascotDatParser::saveAndClearPeptide end";
+ //qDebug() << "MascotDatParser::saveAndClearPeptide end";
}
--
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