From 966a47326875934b4accbc466eed36b1a9e07fbe Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue, 13 Mar 2018 22:26:00 +0100
Subject: [PATCH] use colorscale in compar sheets
---
src/output/ods/comparbasesheet.cpp | 12 ++++++++++++
src/output/ods/comparbasesheet.h | 2 ++
src/output/ods/ptm/ptmspectrasheet.cpp | 1 +
3 files changed, 15 insertions(+)
diff --git a/src/output/ods/comparbasesheet.cpp b/src/output/ods/comparbasesheet.cpp
index 338a6967..86717c9f 100644
--- a/src/output/ods/comparbasesheet.cpp
+++ b/src/output/ods/comparbasesheet.cpp
@@ -31,6 +31,7 @@
#include <tuple>
#include <pappsomspp/utils.h>
+#include <odsstream/odscolorscale.h>
#include <QDebug>
@@ -112,6 +113,9 @@ void ComparBaseSheet::writeProteinMatch(const ProteinMatch * p_protein_match) {
for (MsRunSp & msrun_sp: _msrun_list) {
writeComparValue(p_protein_match, ValidationState::validAndChecked, msrun_sp.get());
+ if(_first_cell_coordinate.isEmpty()) {
+ _first_cell_coordinate = _p_writer->getCellCoordinate();
+ }
}
@@ -149,6 +153,14 @@ void ComparBaseSheet::writeIdentificationGroup(IdentificationGroup * p_ident) {
for (ProteinMatch * p_protein_match : protein_match_list) {
writeProteinMatch(p_protein_match);
}
+
+ if (!_first_cell_coordinate.isEmpty()) {
+ QString last_cell_coordinate = _p_writer->getCellCoordinate();
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ << " " << _first_cell_coordinate<< " " << last_cell_coordinate;
+ OdsColorScale color_scale(_first_cell_coordinate, last_cell_coordinate);
+ _p_writer->addColorScale(color_scale);
+ _first_cell_coordinate = "";
+ }
_p_writer->writeLine();
_p_writer->writeLine();
qDebug() << "ComparBaseSheet::writeIdentificationGroup end";
diff --git a/src/output/ods/comparbasesheet.h b/src/output/ods/comparbasesheet.h
index 0c41418f..da230ef1 100644
--- a/src/output/ods/comparbasesheet.h
+++ b/src/output/ods/comparbasesheet.h
@@ -56,6 +56,8 @@ protected :
std::vector<MsRunSp> _msrun_list;
QString _title_sheet;
+ QString _first_cell_coordinate;
+
};
#endif // COMPARBASESHEET_H
diff --git a/src/output/ods/ptm/ptmspectrasheet.cpp b/src/output/ods/ptm/ptmspectrasheet.cpp
index 2e86f9fa..e337a379 100644
--- a/src/output/ods/ptm/ptmspectrasheet.cpp
+++ b/src/output/ods/ptm/ptmspectrasheet.cpp
@@ -135,6 +135,7 @@ void PtmSpectraSheet::writeIdentificationGroup(IdentificationGroup * p_ident) {
_p_ptm_grouping_experiment = p_ident->getPtmGroupingExperiment();
writeHeaders(p_ident);
+ _p_ptm_grouping_experiment->get
for (const std::pair<unsigned int, GroupingGroupSp> & group_pair : p_ident->getGroupStore().getGroupMap()) {
std::vector<const PeptideEvidence *> peptide_evidence_list = group_pair.second.get()->getPeptideEvidenceList();
--
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