From 90bde36b046505c27cb6dc579810afa56945d41f Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri, 23 Mar 2018 16:04:36 +0100
Subject: [PATCH] delta MH switched from theoretical - observed to observed -
theoretical
---
src/core/peptideevidence.h | 4 ++--
src/gui/peptide_list_view/peptidelistwindow.cpp | 1 +
src/gui/peptide_list_view/peptidetablemodel.cpp | 6 +++---
src/gui/peptide_list_view/peptidetablemodel.h | 4 ++--
4 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/src/core/peptideevidence.h b/src/core/peptideevidence.h
index 4e727774..8dc7dfa4 100644
--- a/src/core/peptideevidence.h
+++ b/src/core/peptideevidence.h
@@ -110,12 +110,12 @@ public :
void updateAutomaticFilters(const AutomaticFilterParameters & automatic_filter_parameters);
/** @brief get delta between theoretical mhplus mass and mhplus experimental mass
- * theoretical mhplus mass - mhplus experimental mass
+ * mhplus experimental mass - theoretical mhplus mass
*/
pappso::mz getDeltaMass() const;
/** @brief get delta in ppm between theoretical mhplus mass and mhplus experimental mass
- * @return theoretical mhplus mass - mhplus experimental mass
+ * @return mhplus experimental mass - theoretical mhplus mass
*/
pappso::mz getPpmDeltaMass() const;
diff --git a/src/gui/peptide_list_view/peptidelistwindow.cpp b/src/gui/peptide_list_view/peptidelistwindow.cpp
index 5f0a4770..f313fe52 100644
--- a/src/gui/peptide_list_view/peptidelistwindow.cpp
+++ b/src/gui/peptide_list_view/peptidelistwindow.cpp
@@ -27,6 +27,7 @@
#include "ui_peptide_view.h"
+
PeptideListQactionColumn::PeptideListQactionColumn(PeptideListWindow * parent, PeptideListColumn column):QAction(parent) {
this->setText(PeptideTableModel::getTitle(column));
diff --git a/src/gui/peptide_list_view/peptidetablemodel.cpp b/src/gui/peptide_list_view/peptidetablemodel.cpp
index 396aac97..3fb37add 100644
--- a/src/gui/peptide_list_view/peptidetablemodel.cpp
+++ b/src/gui/peptide_list_view/peptidetablemodel.cpp
@@ -189,7 +189,7 @@ QVariant PeptideTableModel::data(const QModelIndex &index, int role ) const {
return QVariant((qreal) (_p_protein_match->getPeptideMatchList().at(row).getPeptideEvidence()->getExperimentalMass()+pappso::MHPLUS));
break;
case (std::int8_t)PeptideListColumn::theoretical_mhplus:
- return QVariant((qreal) _p_protein_match->getPeptideMatchList().at(row).getPeptideEvidence()->getPeptideXtpSp().get()->getMz(1));
+ return QVariant(_p_protein_match->getPeptideMatchList().at(row).getPeptideEvidence()->getPeptideXtpSp().get()->getMz(1));
break;
case (std::int8_t)PeptideListColumn::delta_mhplus:
return QVariant((qreal) _p_protein_match->getPeptideMatchList().at(row).getPeptideEvidence()->getDeltaMass());
@@ -369,10 +369,10 @@ const QString PeptideTableModel::getDescription(std::int8_t column) {
return "peptide theoretical MH+";
break;
case (std::int8_t) PeptideListColumn::delta_mhplus:
- return "peptide mass difference in dalton between theoretical mass and observed mass (theoretical - observed)";
+ return "peptide mass difference in dalton between observed mass and theoretical mass (observed - theoretical)";
break;
case (std::int8_t) PeptideListColumn::delta_ppm:
- return "peptide mass difference in ppm between theoretical mass and observed mass";
+ return "peptide mass difference in ppm between observed mass and theoretical mass";
break;
case (std::int8_t) PeptideListColumn::hyperscore:
return "X!Tandem hyperscore";
diff --git a/src/gui/peptide_list_view/peptidetablemodel.h b/src/gui/peptide_list_view/peptidetablemodel.h
index 5aa61a29..cde92b47 100644
--- a/src/gui/peptide_list_view/peptidetablemodel.h
+++ b/src/gui/peptide_list_view/peptidetablemodel.h
@@ -48,8 +48,8 @@ enum class PeptideListColumn: std::int8_t {
used=13,
subgroups=14,
Evalue=15,
- theoretical_mhplus=16,
- experimental_mhplus=17,
+ experimental_mhplus=16,
+ theoretical_mhplus=17,
delta_mhplus=18,
delta_ppm=19,
hyperscore=20,
--
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