diff --git a/src/gui/peptide_detail_view/peptidewindow.cpp b/src/gui/peptide_detail_view/peptidewindow.cpp index 773ad922198905a19f3568a4e09f21626d3d0fcf..d34655ab3265d1e5de20f4ead817e565984a7902 100644 --- a/src/gui/peptide_detail_view/peptidewindow.cpp +++ b/src/gui/peptide_detail_view/peptidewindow.cpp @@ -47,35 +47,50 @@ SpectrumSpLoaderThread::doLoadSpectrumSp(PeptideEvidence *p_peptide_evidence) settings.value("timstof/spectrum_load_method", "mgf").toString(); try { - if(spectrum_load_method == "mgf") + QString tdf_file = + QFileInfo(p_peptide_evidence->getIdentificationDataSource() + ->getMsRunSp() + ->getFileName()) + .absoluteDir() + .absolutePath() + + "/analysis.tdf"; + + if(QFileInfo(tdf_file).exists()) { - spectrum = - p_peptide_evidence->getIdentificationDataSource() - ->getMassSpectrumCstSPtr(p_peptide_evidence->getScanNumber()); + if(spectrum_load_method == "mgf") + { + spectrum = + p_peptide_evidence->getIdentificationDataSource() + ->getMassSpectrumCstSPtr(p_peptide_evidence->getScanNumber()); + } + else + { + std::vector<double> values; + values.push_back(p_peptide_evidence->getCharge()); + values.push_back(p_peptide_evidence->getExperimentalMz()); + values.push_back(p_peptide_evidence->getRetentionTime()); + values.push_back(0.99); // TODO + + QString tdf_file = + QFileInfo(p_peptide_evidence->getIdentificationDataSource() + ->getMsRunSp() + ->getFileName()) + .absoluteDir() + .absolutePath() + + "/analysis.tdf"; + spectrum = + p_peptide_evidence->getIdentificationDataSource() + ->getMassSpectrumCstSPtrMgfToTdf( + p_peptide_evidence->getScanNumber(), tdf_file, values); + } } else { - qDebug() << p_peptide_evidence->getCharge() - << p_peptide_evidence->getExperimentalMz() - << p_peptide_evidence->getRetentionTime(); - - std::vector<double> values; - values.push_back(p_peptide_evidence->getCharge()); - values.push_back(p_peptide_evidence->getExperimentalMz()); - values.push_back(p_peptide_evidence->getRetentionTime()); - values.push_back(0.99); - - QString tdf_file = - QFileInfo(p_peptide_evidence->getIdentificationDataSource() - ->getMsRunSp() - ->getFileName()) - .absoluteDir() - .absolutePath() + - "/analysis.tdf"; - spectrum = p_peptide_evidence->getIdentificationDataSource() - ->getMassSpectrumCstSPtrMgfToTdf( - p_peptide_evidence->getScanNumber(), tdf_file, values); + spectrum = + p_peptide_evidence->getIdentificationDataSource() + ->getMassSpectrumCstSPtr(p_peptide_evidence->getScanNumber()); } + emit spectrumSpReady(spectrum, QString(""), QString("")); }