From 3e5615beab815b24baab7dd11a54cba00ca91971 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Wed, 15 Mar 2017 22:14:01 +0100
Subject: [PATCH] no good
---
.../identificationdatasource.cpp | 5 +++
.../identificationdatasource.h | 13 +++++-
src/core/peptidematch.h | 3 +-
src/core/spectrumid.cpp | 24 +++++++++++
src/core/spectrumid.h | 41 +++++++++++++++++++
5 files changed, 84 insertions(+), 2 deletions(-)
create mode 100644 src/core/spectrumid.cpp
create mode 100644 src/core/spectrumid.h
diff --git a/src/core/identification_sources/identificationdatasource.cpp b/src/core/identification_sources/identificationdatasource.cpp
index f6c6ca64..d3ac5908 100644
--- a/src/core/identification_sources/identificationdatasource.cpp
+++ b/src/core/identification_sources/identificationdatasource.cpp
@@ -21,6 +21,7 @@
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and implementation
******************************************************************************/
#include "identificationdatasource.h"
+#include <QFileInfo>
IdentificationDataSource::IdentificationDataSource(pappso::MsRunIdSp & ms_run_sp)
{
@@ -43,6 +44,10 @@ bool IdentificationDataSource::operator==(const IdentificationDataSource& other)
}
+IdentificationDataSourceSp IdentificationDataSource::getInstance(const QString & location) {
+ QFileInfo location_file(location);
+ QString ext = location_file.suffix();
+}
const QString & IdentificationDataSource::getResourceName () const {
return _resource_name;
diff --git a/src/core/identification_sources/identificationdatasource.h b/src/core/identification_sources/identificationdatasource.h
index 27b99595..d067a3cf 100644
--- a/src/core/identification_sources/identificationdatasource.h
+++ b/src/core/identification_sources/identificationdatasource.h
@@ -25,20 +25,31 @@
#include <pappsomspp/msrun/msrunid.h>
+#include <map>
+
+
+class IdentificationDataSource;
+
+typedef std::shared_ptr<IdentificationDataSource> IdentificationDataSourceSp;
+
class IdentificationDataSource
{
public:
+ static IdentificationDataSourceSp getInstance(const QString & location);
+
IdentificationDataSource(pappso::MsRunIdSp & ms_run_sp);
IdentificationDataSource(const IdentificationDataSource& other);
~IdentificationDataSource();
bool operator==(const IdentificationDataSource& other) const;
-
+
const QString & getResourceName () const;
pappso::MsRunIdSp getMsRunSp () const;
protected :
QString _resource_name;
private :
+ static std::map<QString, IdentificationDataSource *> _map_identification_data_sources;
+ static std::map<QString, pappso::MsRunIdSp> _map_msrunidsp;
pappso::MsRunIdSp _ms_run_sp = nullptr;
};
diff --git a/src/core/peptidematch.h b/src/core/peptidematch.h
index 0c04c2bb..73896224 100644
--- a/src/core/peptidematch.h
+++ b/src/core/peptidematch.h
@@ -26,6 +26,7 @@
#include <pappsomspp/msrun/msrunid.h>
#include <pappsomspp/types.h>
#include <pappsomspp/peptide/peptide.h>
+#include "identification_sources/identificationdatasource.h"
class PeptideMatch
{
@@ -42,8 +43,8 @@ public :
private :
pappso::MsRunIdSp _msrunid_sp;
- pappso::PeptideSp _peptide_sp;
unsigned int _scan;
+ pappso::PeptideSp _peptide_sp;
pappso::pappso_double _rt;
pappso::pappso_double _evalue;
pappso::pappso_double _exp_mass;
diff --git a/src/core/spectrumid.cpp b/src/core/spectrumid.cpp
new file mode 100644
index 00000000..69c68d19
--- /dev/null
+++ b/src/core/spectrumid.cpp
@@ -0,0 +1,24 @@
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#include "spectrumid.h"
diff --git a/src/core/spectrumid.h b/src/core/spectrumid.h
new file mode 100644
index 00000000..d7ea3dbb
--- /dev/null
+++ b/src/core/spectrumid.h
@@ -0,0 +1,41 @@
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+#include <pappsomspp/msrun/msrunid.h>
+
+#ifndef SPECTRUMID_H
+#define SPECTRUMID_H
+
+class SpectrumId
+{
+
+
+private :
+ SpectrumId(pappso::MsRunIdSp msrunid_sp, unsigned int scan);
+
+private :
+ pappso::MsRunIdSp _msrunid_sp;
+ unsigned int _scan;
+
+};
+
+#endif // SPECTRUMID_H
--
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