diff --git a/src/grouping/ptm/ptmsamplescan.cpp b/src/grouping/ptm/ptmsamplescan.cpp
index e2b5b6a8468729dbdc241a73afc3ffc6efa574a7..2d9de0a7d0c55008c3c884f394ee89e31427d4d0 100644
--- a/src/grouping/ptm/ptmsamplescan.cpp
+++ b/src/grouping/ptm/ptmsamplescan.cpp
@@ -30,6 +30,12 @@
#include "ptmsamplescan.h"
#include "../../grouping/ptm/ptmgroupingexperiment.h"
+
+QColor PtmSampleScan::_color_best = QColor("red");
+QColor PtmSampleScan::_color_other_best = QColor("#ff7878");
+QColor PtmSampleScan::_color_no_best = QColor("yellow");
+
+
PtmSampleScan::PtmSampleScan(const PeptideMatch * p_peptide_match) {
_peptide_match_list.push_back(p_peptide_match);
}
@@ -80,3 +86,52 @@ bool PtmSampleScan::add(const PeptideMatch * p_peptide_match) {
position_list.erase(last, position_list.end());
return position_list;
}
+
+const QString PtmSampleScan::getHtmlSequence(const PtmGroupingExperiment * p_ptm_grouping_experiment) const
+{
+ const PeptideMatch * p_representative_peptide = getRepresentativePeptideMatch();
+ size_t pep_size = p_representative_peptide->getPeptideXtpSp().get()->size();
+ //qDebug() << "ProteinMatch::getCoverage begin prot_size=" << prot_size << " " << _protein_sp.get()-//>getSequence();
+ if (pep_size == 0) return 0;
+ bool best_bool[pep_size] = {false};
+ bool other_best_bool[pep_size] = {false};
+ bool nobest_bool[pep_size] = {false};
+ double best_evalue = p_representative_peptide->getEvalue();
+
+
+ for (auto & p_peptide_match : _peptide_match_list) {
+ bool is_best= false;
+ if (p_peptide_match->getEvalue() == best_evalue) {
+ is_best= true;
+ }
+ std::vector<unsigned int> position_list = p_ptm_grouping_experiment->getPtmPositions(p_peptide_match);
+ for (unsigned int position :position_list) {
+ if (p_representative_peptide == p_peptide_match) {
+ best_bool[position] = true;
+ }
+ else if (is_best) {
+ other_best_bool[position] = true;
+ }
+ else {
+ nobest_bool[position] = true;
+ }
+ }
+ }
+ QString sequence = p_representative_peptide->getPeptideXtpSp().get()->getSequence();
+ QString sequence_html;
+ for (unsigned int i=0; i < pep_size; i++) {
+ if (best_bool[i]) {
+ sequence_html.append(QString("<span style=\"color:%2;\">%1</span>").arg(sequence[i]).arg(_color_best.name()));
+ }
+ else if (other_best_bool[i]) {
+ sequence_html.append(QString("<span style=\"color:%2;\">%1</span>").arg(sequence[i]).arg(_color_other_best.name()));
+ }
+ else if (nobest_bool[i]){
+ sequence_html.append(QString("<span style=\"color:%2;\">%1</span>").arg(sequence[i]).arg(_color_no_best.name()));
+ }
+ else {
+ sequence_html.append(sequence[i]);
+ }
+ }
+ return sequence_html;
+}
diff --git a/src/grouping/ptm/ptmsamplescan.h b/src/grouping/ptm/ptmsamplescan.h
index fb07c5b093a26554ca668084ec1d8a46f6ebb1a2..a6fa35f5e4488e53f6e0a573dc0767e951e60b5f 100644
--- a/src/grouping/ptm/ptmsamplescan.h
+++ b/src/grouping/ptm/ptmsamplescan.h
@@ -52,9 +52,13 @@ public:
bool add(const PeptideMatch * p_peptide_match);
std::vector<unsigned int> getBestPtmPositionList(const PtmGroupingExperiment * p_ptm_grouping_experiment) const;
std::vector<unsigned int> getObservedPtmPositionList(const PtmGroupingExperiment * p_ptm_grouping_experiment) const;
+ const QString getHtmlSequence(const PtmGroupingExperiment * p_ptm_grouping_experiment) const;
private:
std::vector<const PeptideMatch *> _peptide_match_list;
+ static QColor _color_best;
+ static QColor _color_other_best;
+ static QColor _color_no_best;
};
diff --git a/src/gui/ptm_peptide_list_view/ptmpeptidelistwindow.cpp b/src/gui/ptm_peptide_list_view/ptmpeptidelistwindow.cpp
index bd65412247c0a6e3251470faa01ae0804c483f61..9724b410d13596cc9127224331b44d1db1b21cbe 100644
--- a/src/gui/ptm_peptide_list_view/ptmpeptidelistwindow.cpp
+++ b/src/gui/ptm_peptide_list_view/ptmpeptidelistwindow.cpp
@@ -50,7 +50,7 @@ PtmPeptideListWindow::PtmPeptideListWindow(PtmIslandListWindow * parent):QMainWi
ui->ptm_peptide_tableview->setModel( _ptm_proxy_model_p );
ui->ptm_peptide_tableview->setSortingEnabled(true);
ui->ptm_peptide_tableview->setAlternatingRowColors(true);
- PtmSequenceDelegate * p_sequence_delegate = new PtmSequenceDelegate();
+ PtmSequenceDelegate * p_sequence_delegate = new PtmSequenceDelegate(_p_ptm_island_list_window, this);
ui->ptm_peptide_tableview->setItemDelegateForColumn((std::int8_t) PtmPeptideListColumn::sequence, p_sequence_delegate);
diff --git a/src/gui/ptm_peptide_list_view/ptmsequencedelegate.cpp b/src/gui/ptm_peptide_list_view/ptmsequencedelegate.cpp
index 509440253d3748f21cf84826f6d8f97381d5ff3a..d3832ff99b16a5dbf0bf9caa3001c5789fad040c 100644
--- a/src/gui/ptm_peptide_list_view/ptmsequencedelegate.cpp
+++ b/src/gui/ptm_peptide_list_view/ptmsequencedelegate.cpp
@@ -28,11 +28,12 @@
#include "ptmsequencedelegate.h"
#include "../../grouping/ptm/ptmsamplescan.h"
+#include "../ptm_island_list_view/ptmislandlistwindow.h"
#include <QTextDocument>
#include <QPainter>
-PtmSequenceDelegate::PtmSequenceDelegate(QWidget *parent) : QStyledItemDelegate(parent) {
-
+PtmSequenceDelegate::PtmSequenceDelegate(PtmIslandListWindow * p_ptm_island_list_window, QWidget *parent) : QStyledItemDelegate(parent) {
+ _p_ptm_island_list_window = p_ptm_island_list_window;
}
void PtmSequenceDelegate::paint(QPainter *painter, const QStyleOptionViewItem &option,
@@ -45,7 +46,7 @@ void PtmSequenceDelegate::paint(QPainter *painter, const QStyleOptionViewItem &o
// painter->fillRect(option.rect, option.palette.highlight());
QTextDocument document;
document.setDocumentMargin(2);
- document.setHtml(p_ptm_sample_scan->getRepresentativePeptideMatch()->getPeptideXtpSp().get()->getSequence());
+ document.setHtml(p_ptm_sample_scan->getHtmlSequence(_p_ptm_island_list_window->getIdentificationGroup()->getPtmGroupingExperiment()));
painter->translate(option.rect.topLeft());
document.drawContents(painter);
painter->translate(-option.rect.topLeft());
diff --git a/src/gui/ptm_peptide_list_view/ptmsequencedelegate.h b/src/gui/ptm_peptide_list_view/ptmsequencedelegate.h
index a8235a69270d3e7629ba8c387f769557e5bdbc7c..ab98fc180ea9d18f2438533759cc766175a7eb60 100644
--- a/src/gui/ptm_peptide_list_view/ptmsequencedelegate.h
+++ b/src/gui/ptm_peptide_list_view/ptmsequencedelegate.h
@@ -30,13 +30,14 @@
#define PTMSEQUENCEDELEGATE_H
#include <QStyledItemDelegate>
+class PtmIslandListWindow;
class PtmSequenceDelegate : public QStyledItemDelegate
{
Q_OBJECT
public:
- PtmSequenceDelegate(QWidget *parent = 0);
+ PtmSequenceDelegate(PtmIslandListWindow * p_ptm_island_list_window, QWidget *parent = 0);
void paint(QPainter *painter, const QStyleOptionViewItem &option,
const QModelIndex &index) const override;
@@ -47,6 +48,7 @@ public:
//void setEditorData(QWidget *editor, const QModelIndex &index) const override;
//void setModelData(QWidget *editor, QAbstractItemModel *model,
// const QModelIndex &index) const override;
-
+private:
+ PtmIslandListWindow * _p_ptm_island_list_window;
};
#endif // PTMSEQUENCEDELEGATE_H